Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1327

Experiment: Paraquat dichloride 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntflgF and flgG are separated by 10 nucleotidesflgG and flgH are separated by 12 nucleotidesflgH and flgI are separated by 11 nucleotides Shewana3_1325: flgF - flagellar basal body rod protein FlgF (RefSeq), at 1,537,711 to 1,538,454 flgF Shewana3_1326: flgG - flagellar basal body rod protein FlgG (RefSeq), at 1,538,465 to 1,539,253 flgG Shewana3_1327: flgH - flagellar basal body L-ring protein (RefSeq), at 1,539,266 to 1,539,940 flgH Shewana3_1328: flgI - flagellar basal body P-ring protein (RefSeq), at 1,539,952 to 1,541,043 flgI Position (kb) 1539 1540Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6 7at 1538.336 kb on - strand, within flgFat 1538.501 kb on + strandat 1538.548 kb on + strand, within flgGat 1538.794 kb on + strand, within flgGat 1538.910 kb on + strand, within flgGat 1538.910 kb on + strand, within flgGat 1538.988 kb on + strand, within flgGat 1539.000 kb on + strand, within flgGat 1539.328 kb on - strandat 1539.717 kb on + strand, within flgHat 1539.725 kb on - strand, within flgHat 1540.135 kb on - strand, within flgIat 1540.320 kb on + strand, within flgIat 1540.394 kb on + strand, within flgIat 1540.401 kb on - strand, within flgIat 1540.403 kb on + strand, within flgIat 1540.411 kb on - strand, within flgIat 1540.574 kb on + strand, within flgIat 1540.617 kb on - strand, within flgIat 1540.642 kb on + strand, within flgIat 1540.843 kb on + strand, within flgIat 1540.869 kb on + strand, within flgI

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml
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1,538,336 - flgF Shewana3_1325 0.84 +3.2
1,538,501 + +2.9
1,538,548 + flgG Shewana3_1326 0.11 +3.2
1,538,794 + flgG Shewana3_1326 0.42 +3.8
1,538,910 + flgG Shewana3_1326 0.56 +3.1
1,538,910 + flgG Shewana3_1326 0.56 +4.0
1,538,988 + flgG Shewana3_1326 0.66 +3.2
1,539,000 + flgG Shewana3_1326 0.68 +3.6
1,539,328 - +1.6
1,539,717 + flgH Shewana3_1327 0.67 +1.8
1,539,725 - flgH Shewana3_1327 0.68 +1.5
1,540,135 - flgI Shewana3_1328 0.17 +2.5
1,540,320 + flgI Shewana3_1328 0.34 +3.4
1,540,394 + flgI Shewana3_1328 0.40 +3.6
1,540,401 - flgI Shewana3_1328 0.41 +4.8
1,540,403 + flgI Shewana3_1328 0.41 +2.5
1,540,411 - flgI Shewana3_1328 0.42 +1.0
1,540,574 + flgI Shewana3_1328 0.57 +3.4
1,540,617 - flgI Shewana3_1328 0.61 +1.2
1,540,642 + flgI Shewana3_1328 0.63 +2.4
1,540,843 + flgI Shewana3_1328 0.82 +7.2
1,540,869 + flgI Shewana3_1328 0.84 +3.5

Or see this region's nucleotide sequence