Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1317 and flgA are separated by 75 nucleotides flgA and Shewana3_1319 are separated by 205 nucleotides Shewana3_1319 and Shewana3_1320 are separated by 101 nucleotides
Shewana3_1317: Shewana3_1317 - anti-sigma-28 factor, FlgM (RefSeq), at 1,531,160 to 1,531,486
_1317
Shewana3_1318: flgA - flagellar basal body P-ring biosynthesis protein FlgA (RefSeq), at 1,531,562 to 1,532,269
flgA
Shewana3_1319: Shewana3_1319 - response regulator receiver modulated CheW protein (RefSeq), at 1,532,475 to 1,533,395
_1319
Shewana3_1320: Shewana3_1320 - MCP methyltransferase, CheR-type (RefSeq), at 1,533,497 to 1,534,336
_1320
Position (kb)
1532
1533
1534 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1531.520 kb on - strand at 1531.623 kb on - strand at 1531.671 kb on + strand, within flgA at 1531.894 kb on - strand, within flgA at 1531.894 kb on - strand, within flgA at 1532.002 kb on + strand, within flgA at 1532.096 kb on + strand, within flgA at 1532.278 kb on + strand at 1532.319 kb on + strand at 1532.329 kb on + strand at 1532.329 kb on + strand at 1532.344 kb on - strand at 1532.528 kb on - strand at 1532.611 kb on + strand, within Shewana3_1319 at 1532.794 kb on + strand, within Shewana3_1319 at 1532.794 kb on + strand, within Shewana3_1319 at 1532.802 kb on - strand, within Shewana3_1319 at 1532.919 kb on + strand, within Shewana3_1319 at 1532.984 kb on + strand, within Shewana3_1319 at 1533.051 kb on + strand, within Shewana3_1319 at 1533.210 kb on + strand, within Shewana3_1319 at 1533.276 kb on + strand, within Shewana3_1319 at 1533.411 kb on + strand at 1533.419 kb on - strand at 1533.557 kb on + strand at 1533.568 kb on - strand at 1533.704 kb on + strand, within Shewana3_1320 at 1533.734 kb on + strand, within Shewana3_1320 at 1533.861 kb on - strand, within Shewana3_1320
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 1,531,520 - +0.8 1,531,623 - +3.0 1,531,671 + flgA Shewana3_1318 0.15 -0.5 1,531,894 - flgA Shewana3_1318 0.47 +3.6 1,531,894 - flgA Shewana3_1318 0.47 +2.7 1,532,002 + flgA Shewana3_1318 0.62 +3.0 1,532,096 + flgA Shewana3_1318 0.75 +3.0 1,532,278 + +3.2 1,532,319 + +2.7 1,532,329 + +2.3 1,532,329 + +3.0 1,532,344 - -0.6 1,532,528 - -0.0 1,532,611 + Shewana3_1319 0.15 +0.1 1,532,794 + Shewana3_1319 0.35 +0.5 1,532,794 + Shewana3_1319 0.35 -1.9 1,532,802 - Shewana3_1319 0.36 +0.6 1,532,919 + Shewana3_1319 0.48 -0.8 1,532,984 + Shewana3_1319 0.55 +0.7 1,533,051 + Shewana3_1319 0.63 +0.3 1,533,210 + Shewana3_1319 0.80 -1.7 1,533,276 + Shewana3_1319 0.87 +0.6 1,533,411 + -1.3 1,533,419 - -0.3 1,533,557 + -0.5 1,533,568 - -1.1 1,533,704 + Shewana3_1320 0.25 -1.1 1,533,734 + Shewana3_1320 0.28 -0.1 1,533,861 - Shewana3_1320 0.43 -0.3
Or see this region's nucleotide sequence