Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1313 and Shewana3_1314 are separated by 239 nucleotides Shewana3_1314 and Shewana3_1315 overlap by 4 nucleotides Shewana3_1315 and Shewana3_1316 are separated by 102 nucleotides Shewana3_1316 and Shewana3_1317 are separated by 2 nucleotides Shewana3_1317 and flgA are separated by 75 nucleotides
Shewana3_1313: Shewana3_1313 - hypothetical protein (RefSeq), at 1,528,145 to 1,529,311
_1313
Shewana3_1314: Shewana3_1314 - hypothetical protein (RefSeq), at 1,529,551 to 1,530,183
_1314
Shewana3_1315: Shewana3_1315 - hypothetical protein (RefSeq), at 1,530,180 to 1,530,629
_1315
Shewana3_1316: Shewana3_1316 - FlgN family protein (RefSeq), at 1,530,732 to 1,531,157
_1316
Shewana3_1317: Shewana3_1317 - anti-sigma-28 factor, FlgM (RefSeq), at 1,531,160 to 1,531,486
_1317
Shewana3_1318: flgA - flagellar basal body P-ring biosynthesis protein FlgA (RefSeq), at 1,531,562 to 1,532,269
flgA
Position (kb)
1530
1531 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1529.321 kb on - strand at 1529.369 kb on - strand at 1529.420 kb on + strand at 1529.438 kb on + strand at 1529.473 kb on + strand at 1529.473 kb on + strand at 1529.481 kb on - strand at 1529.554 kb on - strand at 1529.561 kb on - strand at 1529.592 kb on + strand at 1529.715 kb on + strand, within Shewana3_1314 at 1529.751 kb on + strand, within Shewana3_1314 at 1529.959 kb on - strand, within Shewana3_1314 at 1530.092 kb on + strand, within Shewana3_1314 at 1530.202 kb on - strand at 1530.472 kb on - strand, within Shewana3_1315 at 1530.496 kb on + strand, within Shewana3_1315 at 1530.593 kb on - strand at 1530.638 kb on - strand at 1530.658 kb on + strand at 1531.098 kb on - strand, within Shewana3_1316 at 1531.133 kb on - strand at 1531.196 kb on - strand, within Shewana3_1317 at 1531.336 kb on - strand, within Shewana3_1317 at 1531.520 kb on - strand at 1531.623 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 1,529,321 - -1.6 1,529,369 - +1.2 1,529,420 + -1.0 1,529,438 + -0.0 1,529,473 + +0.4 1,529,473 + -0.3 1,529,481 - -0.4 1,529,554 - +0.4 1,529,561 - +0.9 1,529,592 + -0.7 1,529,715 + Shewana3_1314 0.26 +0.2 1,529,751 + Shewana3_1314 0.32 -2.3 1,529,959 - Shewana3_1314 0.64 +1.6 1,530,092 + Shewana3_1314 0.85 -0.1 1,530,202 - +0.2 1,530,472 - Shewana3_1315 0.65 -0.6 1,530,496 + Shewana3_1315 0.70 +0.1 1,530,593 - +0.9 1,530,638 - +1.2 1,530,658 + -0.9 1,531,098 - Shewana3_1316 0.86 +3.5 1,531,133 - +2.6 1,531,196 - Shewana3_1317 0.11 -0.5 1,531,336 - Shewana3_1317 0.54 +0.2 1,531,520 - +0.8 1,531,623 - +3.0
Or see this region's nucleotide sequence