Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1303 and Shewana3_1304 are separated by 15 nucleotides Shewana3_1304 and Shewana3_1305 are separated by 61 nucleotides Shewana3_1305 and Shewana3_1306 are separated by 1 nucleotides
Shewana3_1303: Shewana3_1303 - polysaccharide biosynthesis protein (RefSeq), at 1,517,856 to 1,518,998
_1303
Shewana3_1304: Shewana3_1304 - N-acetylneuraminate synthase (RefSeq), at 1,519,014 to 1,520,066
_1304
Shewana3_1305: Shewana3_1305 - hypothetical protein (RefSeq), at 1,520,128 to 1,520,940
_1305
Shewana3_1306: Shewana3_1306 - hypothetical protein (RefSeq), at 1,520,942 to 1,521,835
_1306
Position (kb)
1519
1520
1521 Strain fitness (log2 ratio)
-1
0
1 at 1518.024 kb on + strand, within Shewana3_1303 at 1518.024 kb on + strand, within Shewana3_1303 at 1518.119 kb on + strand, within Shewana3_1303 at 1518.127 kb on - strand, within Shewana3_1303 at 1518.606 kb on + strand, within Shewana3_1303 at 1518.688 kb on + strand, within Shewana3_1303 at 1518.803 kb on - strand, within Shewana3_1303 at 1519.000 kb on - strand at 1519.394 kb on - strand, within Shewana3_1304 at 1519.495 kb on - strand, within Shewana3_1304 at 1519.498 kb on - strand, within Shewana3_1304 at 1519.592 kb on - strand, within Shewana3_1304 at 1519.836 kb on + strand, within Shewana3_1304 at 1519.975 kb on + strand at 1519.975 kb on + strand at 1520.103 kb on - strand at 1520.126 kb on + strand at 1520.134 kb on - strand at 1520.317 kb on + strand, within Shewana3_1305 at 1520.397 kb on - strand, within Shewana3_1305 at 1520.561 kb on - strand, within Shewana3_1305 at 1521.018 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 1,518,024 + Shewana3_1303 0.15 +0.9 1,518,024 + Shewana3_1303 0.15 +0.5 1,518,119 + Shewana3_1303 0.23 -1.0 1,518,127 - Shewana3_1303 0.24 +0.2 1,518,606 + Shewana3_1303 0.66 +0.7 1,518,688 + Shewana3_1303 0.73 +1.1 1,518,803 - Shewana3_1303 0.83 +1.6 1,519,000 - -0.5 1,519,394 - Shewana3_1304 0.36 +0.6 1,519,495 - Shewana3_1304 0.46 +0.4 1,519,498 - Shewana3_1304 0.46 +1.4 1,519,592 - Shewana3_1304 0.55 +0.1 1,519,836 + Shewana3_1304 0.78 +0.4 1,519,975 + +1.6 1,519,975 + +0.5 1,520,103 - +0.4 1,520,126 + +0.2 1,520,134 - +0.8 1,520,317 + Shewana3_1305 0.23 +1.2 1,520,397 - Shewana3_1305 0.33 -0.0 1,520,561 - Shewana3_1305 0.53 -1.6 1,521,018 - -1.4
Or see this region's nucleotide sequence