Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1217
Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Paraquat dichloride 0.008 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,421,136 | + | +0.2 | |||
1,421,243 | + | -1.5 | |||
1,421,399 | + | Shewana3_1216 | 0.11 | +0.9 | |
1,421,487 | - | Shewana3_1216 | 0.30 | +0.0 | |
1,421,624 | + | Shewana3_1216 | 0.60 | -0.2 | |
1,421,656 | + | Shewana3_1216 | 0.67 | -0.4 | |
1,421,664 | + | Shewana3_1216 | 0.69 | -1.6 | |
1,421,825 | + | -0.1 | |||
1,421,825 | + | +0.5 | |||
1,421,837 | + | -1.8 | |||
1,421,837 | + | -0.8 | |||
1,421,845 | - | -1.2 | |||
1,422,104 | + | Shewana3_1217 | 0.41 | -0.3 | |
1,422,188 | - | Shewana3_1217 | 0.81 | -2.4 | |
1,422,201 | - | Shewana3_1217 | 0.87 | -1.5 | |
1,422,226 | - | -1.1 | |||
1,422,472 | + | Shewana3_1218 | 0.39 | +0.4 | |
1,422,887 | - | Shewana3_1219 | 0.12 | +0.8 | |
1,422,956 | + | Shewana3_1219 | 0.25 | +0.7 | |
1,422,964 | - | Shewana3_1219 | 0.27 | -0.4 | |
1,422,964 | - | Shewana3_1219 | 0.27 | +0.9 | |
1,423,111 | + | Shewana3_1219 | 0.55 | +1.4 | |
1,423,158 | - | Shewana3_1219 | 0.64 | -0.7 |
Or see this region's nucleotide sequence