Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1209 and Shewana3_1210 are separated by 1 nucleotides Shewana3_1210 and Shewana3_1211 are separated by 62 nucleotides Shewana3_1211 and Shewana3_1212 are separated by 103 nucleotides
Shewana3_1209: Shewana3_1209 - putative signal transduction protein (RefSeq), at 1,413,231 to 1,414,697
_1209
Shewana3_1210: Shewana3_1210 - hypothetical protein (RefSeq), at 1,414,699 to 1,415,238
_1210
Shewana3_1211: Shewana3_1211 - hypothetical protein (RefSeq), at 1,415,301 to 1,416,125
_1211
Shewana3_1212: Shewana3_1212 - diguanylate cyclase (RefSeq), at 1,416,229 to 1,417,965
_1212
Position (kb)
1414
1415
1416 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1413.841 kb on + strand, within Shewana3_1209 at 1413.849 kb on - strand, within Shewana3_1209 at 1413.849 kb on - strand, within Shewana3_1209 at 1413.861 kb on + strand, within Shewana3_1209 at 1414.060 kb on + strand, within Shewana3_1209 at 1414.060 kb on + strand, within Shewana3_1209 at 1414.060 kb on + strand, within Shewana3_1209 at 1414.068 kb on - strand, within Shewana3_1209 at 1414.215 kb on - strand, within Shewana3_1209 at 1414.312 kb on + strand, within Shewana3_1209 at 1414.320 kb on + strand, within Shewana3_1209 at 1414.339 kb on + strand, within Shewana3_1209 at 1414.339 kb on + strand, within Shewana3_1209 at 1414.493 kb on - strand, within Shewana3_1209 at 1414.522 kb on - strand, within Shewana3_1209 at 1414.522 kb on - strand, within Shewana3_1209 at 1414.564 kb on - strand at 1414.575 kb on + strand at 1414.626 kb on - strand at 1414.721 kb on + strand at 1414.871 kb on - strand, within Shewana3_1210 at 1414.916 kb on + strand, within Shewana3_1210 at 1414.926 kb on + strand, within Shewana3_1210 at 1414.963 kb on - strand, within Shewana3_1210 at 1415.160 kb on + strand, within Shewana3_1210 at 1415.173 kb on - strand, within Shewana3_1210 at 1415.173 kb on - strand, within Shewana3_1210 at 1415.183 kb on - strand, within Shewana3_1210 at 1415.500 kb on - strand, within Shewana3_1211 at 1415.779 kb on + strand, within Shewana3_1211 at 1416.136 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 1,413,841 + Shewana3_1209 0.42 -1.8 1,413,849 - Shewana3_1209 0.42 +2.3 1,413,849 - Shewana3_1209 0.42 -0.3 1,413,861 + Shewana3_1209 0.43 -0.2 1,414,060 + Shewana3_1209 0.57 +0.7 1,414,060 + Shewana3_1209 0.57 -1.9 1,414,060 + Shewana3_1209 0.57 +3.3 1,414,068 - Shewana3_1209 0.57 +1.3 1,414,215 - Shewana3_1209 0.67 -0.2 1,414,312 + Shewana3_1209 0.74 -0.3 1,414,320 + Shewana3_1209 0.74 -0.8 1,414,339 + Shewana3_1209 0.76 -0.2 1,414,339 + Shewana3_1209 0.76 -1.7 1,414,493 - Shewana3_1209 0.86 -1.6 1,414,522 - Shewana3_1209 0.88 -0.2 1,414,522 - Shewana3_1209 0.88 -0.2 1,414,564 - -1.6 1,414,575 + -1.3 1,414,626 - +0.9 1,414,721 + -0.5 1,414,871 - Shewana3_1210 0.32 -1.0 1,414,916 + Shewana3_1210 0.40 -0.9 1,414,926 + Shewana3_1210 0.42 +0.1 1,414,963 - Shewana3_1210 0.49 -1.1 1,415,160 + Shewana3_1210 0.85 -1.7 1,415,173 - Shewana3_1210 0.88 +0.3 1,415,173 - Shewana3_1210 0.88 -0.0 1,415,183 - Shewana3_1210 0.90 +0.4 1,415,500 - Shewana3_1211 0.24 +0.6 1,415,779 + Shewana3_1211 0.58 -1.2 1,416,136 + -0.2
Or see this region's nucleotide sequence