Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1200 and Shewana3_1201 are separated by 68 nucleotides Shewana3_1201 and Shewana3_1202 are separated by 149 nucleotides Shewana3_1202 and Shewana3_1203 are separated by 179 nucleotides
Shewana3_1200: Shewana3_1200 - hypothetical protein (RefSeq), at 1,406,415 to 1,406,978
_1200
Shewana3_1201: Shewana3_1201 - translation initiation factor Sui1 (RefSeq), at 1,407,047 to 1,407,376
_1201
Shewana3_1202: Shewana3_1202 - hypothetical protein (RefSeq), at 1,407,526 to 1,407,840
_1202
Shewana3_1203: Shewana3_1203 - hypothetical protein (RefSeq), at 1,408,020 to 1,408,580
_1203
Position (kb)
1407
1408 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1406.545 kb on - strand, within Shewana3_1200 at 1406.563 kb on - strand, within Shewana3_1200 at 1406.660 kb on - strand, within Shewana3_1200 at 1406.726 kb on - strand, within Shewana3_1200 at 1406.997 kb on - strand at 1407.195 kb on - strand, within Shewana3_1201 at 1407.244 kb on - strand, within Shewana3_1201 at 1407.244 kb on - strand, within Shewana3_1201 at 1407.501 kb on + strand at 1407.678 kb on - strand, within Shewana3_1202 at 1407.751 kb on - strand, within Shewana3_1202 at 1407.758 kb on - strand, within Shewana3_1202 at 1407.916 kb on - strand at 1407.939 kb on + strand at 1408.118 kb on + strand, within Shewana3_1203 at 1408.118 kb on + strand, within Shewana3_1203 at 1408.125 kb on + strand, within Shewana3_1203 at 1408.126 kb on - strand, within Shewana3_1203 at 1408.126 kb on - strand, within Shewana3_1203 at 1408.229 kb on + strand, within Shewana3_1203 at 1408.230 kb on + strand, within Shewana3_1203 at 1408.353 kb on + strand, within Shewana3_1203 at 1408.353 kb on + strand, within Shewana3_1203 at 1408.353 kb on + strand, within Shewana3_1203 at 1408.361 kb on - strand, within Shewana3_1203 at 1408.361 kb on - strand, within Shewana3_1203 at 1408.786 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 1,406,545 - Shewana3_1200 0.23 -0.1 1,406,563 - Shewana3_1200 0.26 -0.2 1,406,660 - Shewana3_1200 0.43 +0.4 1,406,726 - Shewana3_1200 0.55 -0.3 1,406,997 - -0.6 1,407,195 - Shewana3_1201 0.45 -0.4 1,407,244 - Shewana3_1201 0.60 -1.0 1,407,244 - Shewana3_1201 0.60 -0.3 1,407,501 + -0.3 1,407,678 - Shewana3_1202 0.48 -0.3 1,407,751 - Shewana3_1202 0.71 +0.2 1,407,758 - Shewana3_1202 0.74 -2.9 1,407,916 - -0.3 1,407,939 + -1.7 1,408,118 + Shewana3_1203 0.17 -0.2 1,408,118 + Shewana3_1203 0.17 +0.3 1,408,125 + Shewana3_1203 0.19 +2.2 1,408,126 - Shewana3_1203 0.19 +1.0 1,408,126 - Shewana3_1203 0.19 +0.1 1,408,229 + Shewana3_1203 0.37 -0.5 1,408,230 + Shewana3_1203 0.37 +0.7 1,408,353 + Shewana3_1203 0.59 +0.1 1,408,353 + Shewana3_1203 0.59 -0.1 1,408,353 + Shewana3_1203 0.59 +0.0 1,408,361 - Shewana3_1203 0.61 -0.6 1,408,361 - Shewana3_1203 0.61 +0.2 1,408,786 + +1.8
Or see this region's nucleotide sequence