Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1151

Experiment: Paraquat dichloride 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1150 and Shewana3_1151 are separated by 232 nucleotidesShewana3_1151 and Shewana3_1152 are separated by 138 nucleotidesShewana3_1152 and Shewana3_1153 are separated by 44 nucleotides Shewana3_1150: Shewana3_1150 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 1,356,690 to 1,358,258 _1150 Shewana3_1151: Shewana3_1151 - sigma 54 modulation protein / SSU ribosomal protein S30P (RefSeq), at 1,358,491 to 1,358,847 _1151 Shewana3_1152: Shewana3_1152 - two component LuxR family transcriptional regulator (RefSeq), at 1,358,986 to 1,359,663 _1152 Shewana3_1153: Shewana3_1153 - putative signal transduction histidine kinase (RefSeq), at 1,359,708 to 1,360,868 _1153 Position (kb) 1358 1359Strain fitness (log2 ratio) -2 -1 0 1 2at 1357.626 kb on - strand, within Shewana3_1150at 1357.717 kb on - strand, within Shewana3_1150at 1357.737 kb on + strand, within Shewana3_1150at 1357.944 kb on - strand, within Shewana3_1150at 1358.143 kb on + strandat 1358.151 kb on - strandat 1358.254 kb on - strandat 1358.386 kb on - strandat 1358.481 kb on + strandat 1358.763 kb on + strand, within Shewana3_1151at 1358.763 kb on + strand, within Shewana3_1151at 1358.771 kb on - strand, within Shewana3_1151at 1358.771 kb on - strand, within Shewana3_1151at 1358.798 kb on + strand, within Shewana3_1151at 1359.001 kb on + strandat 1359.018 kb on - strandat 1359.190 kb on + strand, within Shewana3_1152at 1359.253 kb on + strand, within Shewana3_1152at 1359.253 kb on + strand, within Shewana3_1152at 1359.266 kb on + strand, within Shewana3_1152at 1359.468 kb on + strand, within Shewana3_1152at 1359.493 kb on + strand, within Shewana3_1152at 1359.630 kb on + strandat 1359.750 kb on + strandat 1359.758 kb on - strandat 1359.758 kb on - strandat 1359.758 kb on - strandat 1359.776 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml
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1,357,626 - Shewana3_1150 0.60 -2.7
1,357,717 - Shewana3_1150 0.65 -0.5
1,357,737 + Shewana3_1150 0.67 -0.5
1,357,944 - Shewana3_1150 0.80 -0.7
1,358,143 + +1.1
1,358,151 - -0.2
1,358,254 - +0.9
1,358,386 - +0.4
1,358,481 + -1.8
1,358,763 + Shewana3_1151 0.76 +0.8
1,358,763 + Shewana3_1151 0.76 -1.0
1,358,771 - Shewana3_1151 0.78 +0.1
1,358,771 - Shewana3_1151 0.78 +0.6
1,358,798 + Shewana3_1151 0.86 +2.7
1,359,001 + -1.6
1,359,018 - -2.1
1,359,190 + Shewana3_1152 0.30 +1.1
1,359,253 + Shewana3_1152 0.39 -1.4
1,359,253 + Shewana3_1152 0.39 -0.0
1,359,266 + Shewana3_1152 0.41 -0.2
1,359,468 + Shewana3_1152 0.71 -0.1
1,359,493 + Shewana3_1152 0.75 -0.3
1,359,630 + +0.4
1,359,750 + +0.1
1,359,758 - +0.7
1,359,758 - +0.7
1,359,758 - +1.4
1,359,776 - -0.6

Or see this region's nucleotide sequence