Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1079 and Shewana3_1080 are separated by 20 nucleotides Shewana3_1080 and Shewana3_1081 are separated by 113 nucleotides Shewana3_1081 and Shewana3_1082 are separated by 143 nucleotides
Shewana3_1079: Shewana3_1079 - metal dependent phosphohydrolase (RefSeq), at 1,266,968 to 1,268,236
_1079
Shewana3_1080: Shewana3_1080 - hypothetical protein (RefSeq), at 1,268,257 to 1,268,769
_1080
Shewana3_1081: Shewana3_1081 - AraC family transcriptional regulator (RefSeq), at 1,268,883 to 1,269,650
_1081
Shewana3_1082: Shewana3_1082 - major facilitator transporter (RefSeq), at 1,269,794 to 1,270,972
_1082
Position (kb)
1268
1269
1270 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1267.894 kb on - strand, within Shewana3_1079 at 1268.013 kb on + strand, within Shewana3_1079 at 1268.193 kb on - strand at 1268.255 kb on + strand at 1268.263 kb on - strand at 1268.336 kb on + strand, within Shewana3_1080 at 1268.415 kb on + strand, within Shewana3_1080 at 1268.461 kb on - strand, within Shewana3_1080 at 1268.548 kb on - strand, within Shewana3_1080 at 1268.576 kb on - strand, within Shewana3_1080 at 1268.612 kb on + strand, within Shewana3_1080 at 1268.673 kb on + strand, within Shewana3_1080 at 1268.769 kb on + strand at 1269.206 kb on - strand, within Shewana3_1081 at 1269.256 kb on - strand, within Shewana3_1081 at 1269.278 kb on - strand, within Shewana3_1081 at 1269.404 kb on + strand, within Shewana3_1081 at 1269.549 kb on + strand, within Shewana3_1081 at 1269.708 kb on + strand at 1269.708 kb on + strand at 1269.708 kb on + strand at 1270.035 kb on - strand, within Shewana3_1082 at 1270.078 kb on + strand, within Shewana3_1082 at 1270.115 kb on + strand, within Shewana3_1082 at 1270.231 kb on + strand, within Shewana3_1082 at 1270.246 kb on + strand, within Shewana3_1082 at 1270.253 kb on + strand, within Shewana3_1082 at 1270.597 kb on - strand, within Shewana3_1082 at 1270.650 kb on + strand, within Shewana3_1082
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 1,267,894 - Shewana3_1079 0.73 +0.1 1,268,013 + Shewana3_1079 0.82 +0.4 1,268,193 - +0.6 1,268,255 + +1.4 1,268,263 - +1.4 1,268,336 + Shewana3_1080 0.15 +0.2 1,268,415 + Shewana3_1080 0.31 -1.3 1,268,461 - Shewana3_1080 0.40 -2.4 1,268,548 - Shewana3_1080 0.57 +0.0 1,268,576 - Shewana3_1080 0.62 -0.0 1,268,612 + Shewana3_1080 0.69 -1.5 1,268,673 + Shewana3_1080 0.81 -0.5 1,268,769 + +0.8 1,269,206 - Shewana3_1081 0.42 +0.6 1,269,256 - Shewana3_1081 0.49 +0.2 1,269,278 - Shewana3_1081 0.51 -1.3 1,269,404 + Shewana3_1081 0.68 +2.0 1,269,549 + Shewana3_1081 0.87 -0.2 1,269,708 + -2.6 1,269,708 + -0.5 1,269,708 + -2.5 1,270,035 - Shewana3_1082 0.20 -0.1 1,270,078 + Shewana3_1082 0.24 -1.0 1,270,115 + Shewana3_1082 0.27 -0.4 1,270,231 + Shewana3_1082 0.37 -0.8 1,270,246 + Shewana3_1082 0.38 -0.1 1,270,253 + Shewana3_1082 0.39 +0.6 1,270,597 - Shewana3_1082 0.68 -1.2 1,270,650 + Shewana3_1082 0.73 -0.9
Or see this region's nucleotide sequence