Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1030

Experiment: Paraquat dichloride 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnusA and infB are separated by 25 nucleotidesinfB and rbfA are separated by 62 nucleotidesrbfA and Shewana3_1032 overlap by 1 nucleotides Shewana3_1029: nusA - transcription elongation factor NusA (RefSeq), at 1,200,689 to 1,202,188 nusA Shewana3_1030: infB - translation initiation factor IF-2 (RefSeq), at 1,202,214 to 1,204,883 infB Shewana3_1031: rbfA - ribosome-binding factor A (RefSeq), at 1,204,946 to 1,205,386 rbfA Shewana3_1032: Shewana3_1032 - tRNA pseudouridine synthase B (RefSeq), at 1,205,386 to 1,206,339 _1032 Position (kb) 1202 1203 1204 1205Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1201.970 kb on + strand, within nusAat 1201.980 kb on + strand, within nusAat 1201.980 kb on + strand, within nusAat 1202.027 kb on + strand, within nusAat 1205.293 kb on - strand, within rbfAat 1205.358 kb on + strandat 1205.667 kb on + strand, within Shewana3_1032

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml
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1,201,970 + nusA Shewana3_1029 0.85 -2.7
1,201,980 + nusA Shewana3_1029 0.86 +3.6
1,201,980 + nusA Shewana3_1029 0.86 -2.4
1,202,027 + nusA Shewana3_1029 0.89 -1.5
1,205,293 - rbfA Shewana3_1031 0.79 +2.2
1,205,358 + +3.0
1,205,667 + Shewana3_1032 0.29 +1.8

Or see this region's nucleotide sequence