Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0985

Experiment: Paraquat dichloride 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0984 and Shewana3_0985 are separated by 84 nucleotidesShewana3_0985 and Shewana3_0986 are separated by 229 nucleotidesShewana3_0986 and Shewana3_0987 are separated by 95 nucleotides Shewana3_0984: Shewana3_0984 - hypothetical protein (RefSeq), at 1,155,949 to 1,157,154 _0984 Shewana3_0985: Shewana3_0985 - Ferritin, Dps family protein (RefSeq), at 1,157,239 to 1,157,706 _0985 Shewana3_0986: Shewana3_0986 - hypothetical protein (RefSeq), at 1,157,936 to 1,158,286 _0986 Shewana3_0987: Shewana3_0987 - SSU ribosomal protein S18P alanine acetyltransferase (RefSeq), at 1,158,382 to 1,158,834 _0987 Position (kb) 1157 1158Strain fitness (log2 ratio) -2 -1 0 1 2at 1156.268 kb on - strand, within Shewana3_0984at 1156.300 kb on - strand, within Shewana3_0984at 1156.340 kb on + strand, within Shewana3_0984at 1156.404 kb on + strand, within Shewana3_0984at 1156.414 kb on - strand, within Shewana3_0984at 1156.424 kb on - strand, within Shewana3_0984at 1156.494 kb on + strand, within Shewana3_0984at 1156.581 kb on + strand, within Shewana3_0984at 1156.594 kb on - strand, within Shewana3_0984at 1156.717 kb on + strand, within Shewana3_0984at 1156.759 kb on + strand, within Shewana3_0984at 1156.906 kb on + strand, within Shewana3_0984at 1156.914 kb on - strand, within Shewana3_0984at 1156.966 kb on + strand, within Shewana3_0984at 1157.093 kb on - strandat 1157.127 kb on - strandat 1157.286 kb on + strand, within Shewana3_0985at 1157.451 kb on + strand, within Shewana3_0985at 1157.495 kb on - strand, within Shewana3_0985at 1157.649 kb on + strand, within Shewana3_0985at 1158.253 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml
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1,156,268 - Shewana3_0984 0.26 -0.5
1,156,300 - Shewana3_0984 0.29 +0.0
1,156,340 + Shewana3_0984 0.32 -0.7
1,156,404 + Shewana3_0984 0.38 +0.9
1,156,414 - Shewana3_0984 0.39 -1.4
1,156,424 - Shewana3_0984 0.39 -0.6
1,156,494 + Shewana3_0984 0.45 +1.2
1,156,581 + Shewana3_0984 0.52 +0.6
1,156,594 - Shewana3_0984 0.53 +1.9
1,156,717 + Shewana3_0984 0.64 -1.0
1,156,759 + Shewana3_0984 0.67 +0.4
1,156,906 + Shewana3_0984 0.79 -0.4
1,156,914 - Shewana3_0984 0.80 -0.3
1,156,966 + Shewana3_0984 0.84 +0.0
1,157,093 - +0.4
1,157,127 - +0.1
1,157,286 + Shewana3_0985 0.10 -1.9
1,157,451 + Shewana3_0985 0.45 +1.9
1,157,495 - Shewana3_0985 0.55 -1.0
1,157,649 + Shewana3_0985 0.88 -0.0
1,158,253 - -0.1

Or see this region's nucleotide sequence