Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0984 and Shewana3_0985 are separated by 84 nucleotides Shewana3_0985 and Shewana3_0986 are separated by 229 nucleotides Shewana3_0986 and Shewana3_0987 are separated by 95 nucleotides
Shewana3_0984: Shewana3_0984 - hypothetical protein (RefSeq), at 1,155,949 to 1,157,154
_0984
Shewana3_0985: Shewana3_0985 - Ferritin, Dps family protein (RefSeq), at 1,157,239 to 1,157,706
_0985
Shewana3_0986: Shewana3_0986 - hypothetical protein (RefSeq), at 1,157,936 to 1,158,286
_0986
Shewana3_0987: Shewana3_0987 - SSU ribosomal protein S18P alanine acetyltransferase (RefSeq), at 1,158,382 to 1,158,834
_0987
Position (kb)
1157
1158 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1156.268 kb on - strand, within Shewana3_0984 at 1156.300 kb on - strand, within Shewana3_0984 at 1156.340 kb on + strand, within Shewana3_0984 at 1156.404 kb on + strand, within Shewana3_0984 at 1156.414 kb on - strand, within Shewana3_0984 at 1156.424 kb on - strand, within Shewana3_0984 at 1156.494 kb on + strand, within Shewana3_0984 at 1156.581 kb on + strand, within Shewana3_0984 at 1156.594 kb on - strand, within Shewana3_0984 at 1156.717 kb on + strand, within Shewana3_0984 at 1156.759 kb on + strand, within Shewana3_0984 at 1156.906 kb on + strand, within Shewana3_0984 at 1156.914 kb on - strand, within Shewana3_0984 at 1156.966 kb on + strand, within Shewana3_0984 at 1157.093 kb on - strand at 1157.127 kb on - strand at 1157.286 kb on + strand, within Shewana3_0985 at 1157.451 kb on + strand, within Shewana3_0985 at 1157.495 kb on - strand, within Shewana3_0985 at 1157.649 kb on + strand, within Shewana3_0985 at 1158.253 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 1,156,268 - Shewana3_0984 0.26 -0.5 1,156,300 - Shewana3_0984 0.29 +0.0 1,156,340 + Shewana3_0984 0.32 -0.7 1,156,404 + Shewana3_0984 0.38 +0.9 1,156,414 - Shewana3_0984 0.39 -1.4 1,156,424 - Shewana3_0984 0.39 -0.6 1,156,494 + Shewana3_0984 0.45 +1.2 1,156,581 + Shewana3_0984 0.52 +0.6 1,156,594 - Shewana3_0984 0.53 +1.9 1,156,717 + Shewana3_0984 0.64 -1.0 1,156,759 + Shewana3_0984 0.67 +0.4 1,156,906 + Shewana3_0984 0.79 -0.4 1,156,914 - Shewana3_0984 0.80 -0.3 1,156,966 + Shewana3_0984 0.84 +0.0 1,157,093 - +0.4 1,157,127 - +0.1 1,157,286 + Shewana3_0985 0.10 -1.9 1,157,451 + Shewana3_0985 0.45 +1.9 1,157,495 - Shewana3_0985 0.55 -1.0 1,157,649 + Shewana3_0985 0.88 -0.0 1,158,253 - -0.1
Or see this region's nucleotide sequence