Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0981 and Shewana3_R0030 are separated by 305 nucleotides Shewana3_R0030 and Shewana3_0982 are separated by 170 nucleotides Shewana3_0982 and Shewana3_0983 are separated by 60 nucleotides Shewana3_0983 and Shewana3_0984 overlap by 11 nucleotides
Shewana3_0981: Shewana3_0981 - hypothetical protein (RefSeq), at 1,151,928 to 1,152,896
_0981
Shewana3_R0030: Shewana3_R0030 - tRNA-Trp (RefSeq), at 1,153,202 to 1,153,278
_R0030
Shewana3_0982: Shewana3_0982 - hypothetical protein (RefSeq), at 1,153,449 to 1,153,727
_0982
Shewana3_0983: Shewana3_0983 - TonB-dependent siderophore receptor (RefSeq), at 1,153,788 to 1,155,959
_0983
Shewana3_0984: Shewana3_0984 - hypothetical protein (RefSeq), at 1,155,949 to 1,157,154
_0984
Position (kb)
1153
1154
1155
1156 Strain fitness (log2 ratio)
-1
0
1
2
3
4
5
6 at 1153.079 kb on + strand at 1153.401 kb on - strand at 1153.437 kb on - strand at 1153.465 kb on + strand at 1153.835 kb on - strand at 1154.149 kb on - strand, within Shewana3_0983 at 1154.347 kb on + strand, within Shewana3_0983 at 1154.432 kb on + strand, within Shewana3_0983 at 1154.587 kb on + strand, within Shewana3_0983 at 1154.741 kb on - strand, within Shewana3_0983 at 1155.036 kb on + strand, within Shewana3_0983 at 1155.084 kb on - strand, within Shewana3_0983 at 1155.193 kb on - strand, within Shewana3_0983 at 1155.337 kb on + strand, within Shewana3_0983 at 1155.345 kb on - strand, within Shewana3_0983 at 1155.421 kb on + strand, within Shewana3_0983 at 1156.165 kb on - strand, within Shewana3_0984 at 1156.268 kb on - strand, within Shewana3_0984 at 1156.300 kb on - strand, within Shewana3_0984 at 1156.340 kb on + strand, within Shewana3_0984 at 1156.404 kb on + strand, within Shewana3_0984 at 1156.414 kb on - strand, within Shewana3_0984 at 1156.424 kb on - strand, within Shewana3_0984 at 1156.494 kb on + strand, within Shewana3_0984 at 1156.581 kb on + strand, within Shewana3_0984 at 1156.594 kb on - strand, within Shewana3_0984 at 1156.717 kb on + strand, within Shewana3_0984 at 1156.759 kb on + strand, within Shewana3_0984 at 1156.906 kb on + strand, within Shewana3_0984 at 1156.914 kb on - strand, within Shewana3_0984
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 1,153,079 + -0.1 1,153,401 - +3.4 1,153,437 - +3.4 1,153,465 + -1.3 1,153,835 - +0.6 1,154,149 - Shewana3_0983 0.17 +1.1 1,154,347 + Shewana3_0983 0.26 -1.0 1,154,432 + Shewana3_0983 0.30 -0.4 1,154,587 + Shewana3_0983 0.37 -0.6 1,154,741 - Shewana3_0983 0.44 +0.9 1,155,036 + Shewana3_0983 0.57 -1.4 1,155,084 - Shewana3_0983 0.60 +1.4 1,155,193 - Shewana3_0983 0.65 -0.1 1,155,337 + Shewana3_0983 0.71 +0.7 1,155,345 - Shewana3_0983 0.72 -0.3 1,155,421 + Shewana3_0983 0.75 -1.4 1,156,165 - Shewana3_0984 0.18 +6.3 1,156,268 - Shewana3_0984 0.26 -0.5 1,156,300 - Shewana3_0984 0.29 +0.0 1,156,340 + Shewana3_0984 0.32 -0.7 1,156,404 + Shewana3_0984 0.38 +0.9 1,156,414 - Shewana3_0984 0.39 -1.4 1,156,424 - Shewana3_0984 0.39 -0.6 1,156,494 + Shewana3_0984 0.45 +1.2 1,156,581 + Shewana3_0984 0.52 +0.6 1,156,594 - Shewana3_0984 0.53 +1.9 1,156,717 + Shewana3_0984 0.64 -1.0 1,156,759 + Shewana3_0984 0.67 +0.4 1,156,906 + Shewana3_0984 0.79 -0.4 1,156,914 - Shewana3_0984 0.80 -0.3
Or see this region's nucleotide sequence