Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0926 and Shewana3_0927 are separated by 655 nucleotides Shewana3_0927 and Shewana3_0928 are separated by 55 nucleotides
Shewana3_0926: Shewana3_0926 - GreA/GreB family elongation factor (RefSeq), at 1,082,097 to 1,082,483
_0926
Shewana3_0927: Shewana3_0927 - cytochrome d ubiquinol oxidase, subunit II (RefSeq), at 1,083,139 to 1,084,146
_0927
Shewana3_0928: Shewana3_0928 - cytochrome bd ubiquinol oxidase, subunit I (RefSeq), at 1,084,202 to 1,085,542
_0928
Position (kb)
1083
1084
1085 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1082.140 kb on + strand, within Shewana3_0926 at 1082.160 kb on - strand, within Shewana3_0926 at 1082.192 kb on + strand, within Shewana3_0926 at 1082.192 kb on + strand, within Shewana3_0926 at 1082.194 kb on - strand, within Shewana3_0926 at 1082.200 kb on - strand, within Shewana3_0926 at 1082.201 kb on - strand, within Shewana3_0926 at 1082.201 kb on - strand, within Shewana3_0926 at 1082.204 kb on + strand, within Shewana3_0926 at 1082.212 kb on - strand, within Shewana3_0926 at 1082.212 kb on - strand, within Shewana3_0926 at 1082.212 kb on - strand, within Shewana3_0926 at 1082.212 kb on - strand, within Shewana3_0926 at 1082.230 kb on + strand, within Shewana3_0926 at 1082.231 kb on + strand, within Shewana3_0926 at 1082.237 kb on + strand, within Shewana3_0926 at 1082.238 kb on - strand, within Shewana3_0926 at 1082.245 kb on - strand, within Shewana3_0926 at 1082.251 kb on + strand, within Shewana3_0926 at 1082.256 kb on + strand, within Shewana3_0926 at 1082.264 kb on - strand, within Shewana3_0926 at 1082.285 kb on + strand, within Shewana3_0926 at 1082.342 kb on - strand, within Shewana3_0926 at 1082.344 kb on + strand, within Shewana3_0926 at 1082.344 kb on + strand, within Shewana3_0926 at 1082.344 kb on + strand, within Shewana3_0926 at 1082.344 kb on + strand, within Shewana3_0926 at 1082.344 kb on + strand, within Shewana3_0926 at 1082.344 kb on + strand, within Shewana3_0926 at 1082.344 kb on + strand, within Shewana3_0926 at 1082.344 kb on + strand, within Shewana3_0926 at 1082.344 kb on + strand, within Shewana3_0926 at 1082.344 kb on + strand, within Shewana3_0926 at 1082.352 kb on - strand, within Shewana3_0926 at 1082.352 kb on - strand, within Shewana3_0926 at 1082.352 kb on - strand, within Shewana3_0926 at 1082.352 kb on - strand, within Shewana3_0926 at 1082.352 kb on - strand, within Shewana3_0926 at 1082.352 kb on - strand, within Shewana3_0926 at 1082.355 kb on + strand, within Shewana3_0926 at 1082.368 kb on - strand, within Shewana3_0926 at 1082.386 kb on + strand, within Shewana3_0926 at 1082.386 kb on - strand, within Shewana3_0926 at 1082.402 kb on - strand, within Shewana3_0926 at 1082.410 kb on - strand, within Shewana3_0926 at 1082.410 kb on - strand, within Shewana3_0926 at 1082.412 kb on + strand, within Shewana3_0926 at 1082.449 kb on + strand at 1082.496 kb on + strand at 1082.497 kb on - strand at 1082.514 kb on - strand at 1082.577 kb on - strand at 1082.579 kb on - strand at 1082.580 kb on + strand at 1082.580 kb on + strand at 1082.638 kb on + strand at 1082.699 kb on - strand at 1082.720 kb on + strand at 1082.764 kb on + strand at 1082.764 kb on + strand at 1082.764 kb on + strand at 1082.764 kb on + strand at 1082.764 kb on + strand at 1082.772 kb on - strand at 1082.772 kb on - strand at 1082.772 kb on - strand at 1082.772 kb on - strand at 1082.774 kb on + strand at 1082.774 kb on + strand at 1082.774 kb on + strand at 1082.774 kb on - strand at 1082.781 kb on + strand at 1082.782 kb on - strand at 1082.782 kb on - strand at 1082.782 kb on - strand at 1082.782 kb on - strand at 1082.782 kb on - strand at 1082.782 kb on - strand at 1082.788 kb on - strand at 1082.809 kb on + strand at 1082.828 kb on - strand at 1082.830 kb on + strand at 1082.929 kb on + strand at 1082.934 kb on + strand at 1082.942 kb on + strand at 1082.942 kb on - strand at 1082.944 kb on + strand at 1082.949 kb on + strand at 1082.949 kb on + strand at 1082.949 kb on + strand at 1082.949 kb on + strand at 1082.949 kb on + strand at 1082.951 kb on + strand at 1082.956 kb on + strand at 1082.956 kb on + strand at 1082.956 kb on + strand at 1082.956 kb on + strand at 1082.956 kb on + strand at 1082.956 kb on + strand at 1082.956 kb on + strand at 1082.957 kb on - strand at 1082.957 kb on - strand at 1082.964 kb on - strand at 1082.964 kb on - strand at 1082.964 kb on - strand at 1082.964 kb on - strand at 1082.964 kb on - strand at 1082.964 kb on - strand at 1082.988 kb on + strand at 1083.029 kb on - strand at 1083.094 kb on - strand at 1083.094 kb on - strand at 1083.094 kb on - strand at 1083.197 kb on + strand at 1083.240 kb on + strand, within Shewana3_0927 at 1083.254 kb on - strand, within Shewana3_0927 at 1083.311 kb on - strand, within Shewana3_0927 at 1083.365 kb on - strand, within Shewana3_0927 at 1083.421 kb on + strand, within Shewana3_0927 at 1083.429 kb on - strand, within Shewana3_0927 at 1083.488 kb on + strand, within Shewana3_0927 at 1083.498 kb on + strand, within Shewana3_0927 at 1083.533 kb on + strand, within Shewana3_0927 at 1083.578 kb on + strand, within Shewana3_0927 at 1083.637 kb on + strand, within Shewana3_0927 at 1083.637 kb on + strand, within Shewana3_0927 at 1083.817 kb on - strand, within Shewana3_0927 at 1083.902 kb on + strand, within Shewana3_0927 at 1083.945 kb on + strand, within Shewana3_0927 at 1084.017 kb on - strand, within Shewana3_0927 at 1084.087 kb on + strand at 1084.087 kb on + strand at 1084.093 kb on - strand at 1084.220 kb on + strand at 1084.335 kb on - strand at 1084.337 kb on - strand, within Shewana3_0928 at 1084.451 kb on - strand, within Shewana3_0928 at 1084.489 kb on - strand, within Shewana3_0928 at 1084.508 kb on - strand, within Shewana3_0928 at 1084.551 kb on - strand, within Shewana3_0928 at 1084.553 kb on - strand, within Shewana3_0928 at 1084.646 kb on - strand, within Shewana3_0928 at 1084.672 kb on - strand, within Shewana3_0928 at 1085.068 kb on - strand, within Shewana3_0928 at 1085.069 kb on + strand, within Shewana3_0928 at 1085.071 kb on + strand, within Shewana3_0928 at 1085.077 kb on - strand, within Shewana3_0928 at 1085.077 kb on - strand, within Shewana3_0928
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 1,082,140 + Shewana3_0926 0.11 -1.0 1,082,160 - Shewana3_0926 0.16 -1.0 1,082,192 + Shewana3_0926 0.25 -0.3 1,082,192 + Shewana3_0926 0.25 -0.3 1,082,194 - Shewana3_0926 0.25 -0.5 1,082,200 - Shewana3_0926 0.27 +0.5 1,082,201 - Shewana3_0926 0.27 +0.5 1,082,201 - Shewana3_0926 0.27 +0.5 1,082,204 + Shewana3_0926 0.28 -1.4 1,082,212 - Shewana3_0926 0.30 -1.1 1,082,212 - Shewana3_0926 0.30 -0.2 1,082,212 - Shewana3_0926 0.30 +0.4 1,082,212 - Shewana3_0926 0.30 +0.5 1,082,230 + Shewana3_0926 0.34 +0.7 1,082,231 + Shewana3_0926 0.35 -0.4 1,082,237 + Shewana3_0926 0.36 +1.9 1,082,238 - Shewana3_0926 0.36 -1.6 1,082,245 - Shewana3_0926 0.38 -0.6 1,082,251 + Shewana3_0926 0.40 +1.2 1,082,256 + Shewana3_0926 0.41 +0.5 1,082,264 - Shewana3_0926 0.43 +1.1 1,082,285 + Shewana3_0926 0.49 -0.9 1,082,342 - Shewana3_0926 0.63 +0.8 1,082,344 + Shewana3_0926 0.64 +0.5 1,082,344 + Shewana3_0926 0.64 +0.6 1,082,344 + Shewana3_0926 0.64 -1.0 1,082,344 + Shewana3_0926 0.64 +0.3 1,082,344 + Shewana3_0926 0.64 +0.5 1,082,344 + Shewana3_0926 0.64 +0.0 1,082,344 + Shewana3_0926 0.64 +0.9 1,082,344 + Shewana3_0926 0.64 -0.8 1,082,344 + Shewana3_0926 0.64 -0.7 1,082,344 + Shewana3_0926 0.64 +0.4 1,082,352 - Shewana3_0926 0.66 -1.2 1,082,352 - Shewana3_0926 0.66 -0.7 1,082,352 - Shewana3_0926 0.66 -0.2 1,082,352 - Shewana3_0926 0.66 -0.4 1,082,352 - Shewana3_0926 0.66 -0.6 1,082,352 - Shewana3_0926 0.66 -0.4 1,082,355 + Shewana3_0926 0.67 +0.6 1,082,368 - Shewana3_0926 0.70 +0.9 1,082,386 + Shewana3_0926 0.75 +0.8 1,082,386 - Shewana3_0926 0.75 +1.1 1,082,402 - Shewana3_0926 0.79 +1.0 1,082,410 - Shewana3_0926 0.81 +0.1 1,082,410 - Shewana3_0926 0.81 -1.8 1,082,412 + Shewana3_0926 0.81 -0.3 1,082,449 + -0.1 1,082,496 + -1.6 1,082,497 - -0.1 1,082,514 - +2.3 1,082,577 - -0.2 1,082,579 - +0.6 1,082,580 + -1.4 1,082,580 + +0.1 1,082,638 + +3.5 1,082,699 - -0.3 1,082,720 + +0.9 1,082,764 + -0.4 1,082,764 + +1.3 1,082,764 + +0.1 1,082,764 + -0.2 1,082,764 + -0.9 1,082,772 - -0.2 1,082,772 - -0.2 1,082,772 - +1.0 1,082,772 - +1.6 1,082,774 + +0.7 1,082,774 + +0.9 1,082,774 + -1.3 1,082,774 - -0.4 1,082,781 + -0.7 1,082,782 - -1.6 1,082,782 - -0.2 1,082,782 - +1.1 1,082,782 - -2.2 1,082,782 - -0.6 1,082,782 - +0.4 1,082,788 - -1.5 1,082,809 + -0.3 1,082,828 - +1.9 1,082,830 + +0.1 1,082,929 + -1.2 1,082,934 + +0.2 1,082,942 + -1.9 1,082,942 - -0.2 1,082,944 + -0.2 1,082,949 + +0.8 1,082,949 + -0.3 1,082,949 + -1.0 1,082,949 + -0.2 1,082,949 + +0.2 1,082,951 + -1.1 1,082,956 + -0.4 1,082,956 + +0.5 1,082,956 + -0.0 1,082,956 + -1.0 1,082,956 + -0.7 1,082,956 + +2.5 1,082,956 + -0.5 1,082,957 - -1.8 1,082,957 - -0.3 1,082,964 - +0.8 1,082,964 - +0.1 1,082,964 - -0.6 1,082,964 - +1.2 1,082,964 - +0.8 1,082,964 - -0.1 1,082,988 + +1.2 1,083,029 - +0.5 1,083,094 - -0.8 1,083,094 - +0.8 1,083,094 - -0.7 1,083,197 + +0.4 1,083,240 + Shewana3_0927 0.10 +0.7 1,083,254 - Shewana3_0927 0.11 -0.8 1,083,311 - Shewana3_0927 0.17 +0.4 1,083,365 - Shewana3_0927 0.22 -2.3 1,083,421 + Shewana3_0927 0.28 +0.1 1,083,429 - Shewana3_0927 0.29 -0.7 1,083,488 + Shewana3_0927 0.35 +0.3 1,083,498 + Shewana3_0927 0.36 -0.3 1,083,533 + Shewana3_0927 0.39 +0.3 1,083,578 + Shewana3_0927 0.44 -1.1 1,083,637 + Shewana3_0927 0.49 -0.8 1,083,637 + Shewana3_0927 0.49 +0.2 1,083,817 - Shewana3_0927 0.67 +0.2 1,083,902 + Shewana3_0927 0.76 +0.6 1,083,945 + Shewana3_0927 0.80 -1.5 1,084,017 - Shewana3_0927 0.87 +2.0 1,084,087 + -0.5 1,084,087 + +0.2 1,084,093 - -0.7 1,084,220 + +0.2 1,084,335 - +0.7 1,084,337 - Shewana3_0928 0.10 -0.8 1,084,451 - Shewana3_0928 0.19 -0.0 1,084,489 - Shewana3_0928 0.21 +1.1 1,084,508 - Shewana3_0928 0.23 -0.2 1,084,551 - Shewana3_0928 0.26 +0.1 1,084,553 - Shewana3_0928 0.26 -0.4 1,084,646 - Shewana3_0928 0.33 +0.1 1,084,672 - Shewana3_0928 0.35 -0.6 1,085,068 - Shewana3_0928 0.65 +0.8 1,085,069 + Shewana3_0928 0.65 -0.0 1,085,071 + Shewana3_0928 0.65 -0.1 1,085,077 - Shewana3_0928 0.65 -1.1 1,085,077 - Shewana3_0928 0.65 -1.7
Or see this region's nucleotide sequence