Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0861 and Shewana3_0862 are separated by 430 nucleotides Shewana3_0862 and Shewana3_0863 are separated by 78 nucleotides
Shewana3_0861: Shewana3_0861 - phospholipase A1 (RefSeq), at 1,003,095 to 1,003,979
_0861
Shewana3_0862: Shewana3_0862 - uroporphyrinogen-III C-methyltransferase (RefSeq), at 1,004,410 to 1,005,240
_0862
Shewana3_0863: Shewana3_0863 - sulfate adenylyltransferase subunit 2 (RefSeq), at 1,005,319 to 1,006,227
_0863
Position (kb)
1004
1005
1006 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1003.449 kb on + strand, within Shewana3_0861 at 1003.537 kb on + strand, within Shewana3_0861 at 1003.537 kb on + strand, within Shewana3_0861 at 1003.830 kb on + strand, within Shewana3_0861 at 1004.454 kb on - strand at 1004.480 kb on - strand at 1004.533 kb on + strand, within Shewana3_0862 at 1004.533 kb on + strand, within Shewana3_0862 at 1004.577 kb on + strand, within Shewana3_0862 at 1004.622 kb on + strand, within Shewana3_0862 at 1004.622 kb on + strand, within Shewana3_0862 at 1004.622 kb on + strand, within Shewana3_0862 at 1004.630 kb on - strand, within Shewana3_0862 at 1004.635 kb on - strand, within Shewana3_0862 at 1004.827 kb on + strand, within Shewana3_0862 at 1004.951 kb on - strand, within Shewana3_0862 at 1004.988 kb on - strand, within Shewana3_0862 at 1004.995 kb on + strand, within Shewana3_0862 at 1005.011 kb on + strand, within Shewana3_0862 at 1005.079 kb on + strand, within Shewana3_0862 at 1005.095 kb on - strand, within Shewana3_0862 at 1005.121 kb on - strand, within Shewana3_0862 at 1005.182 kb on - strand at 1005.189 kb on - strand at 1005.315 kb on + strand at 1005.332 kb on + strand at 1005.446 kb on + strand, within Shewana3_0863 at 1005.602 kb on - strand, within Shewana3_0863 at 1005.607 kb on + strand, within Shewana3_0863 at 1005.646 kb on - strand, within Shewana3_0863 at 1005.744 kb on - strand, within Shewana3_0863 at 1005.827 kb on + strand, within Shewana3_0863 at 1005.827 kb on + strand, within Shewana3_0863 at 1006.180 kb on + strand at 1006.183 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 1,003,449 + Shewana3_0861 0.40 -0.0 1,003,537 + Shewana3_0861 0.50 -0.3 1,003,537 + Shewana3_0861 0.50 -1.2 1,003,830 + Shewana3_0861 0.83 +1.0 1,004,454 - +0.4 1,004,480 - +0.5 1,004,533 + Shewana3_0862 0.15 -0.3 1,004,533 + Shewana3_0862 0.15 -0.4 1,004,577 + Shewana3_0862 0.20 -0.7 1,004,622 + Shewana3_0862 0.26 -0.0 1,004,622 + Shewana3_0862 0.26 -0.1 1,004,622 + Shewana3_0862 0.26 +0.0 1,004,630 - Shewana3_0862 0.26 -0.3 1,004,635 - Shewana3_0862 0.27 -1.2 1,004,827 + Shewana3_0862 0.50 +0.4 1,004,951 - Shewana3_0862 0.65 +0.4 1,004,988 - Shewana3_0862 0.70 -0.2 1,004,995 + Shewana3_0862 0.70 -0.4 1,005,011 + Shewana3_0862 0.72 -0.8 1,005,079 + Shewana3_0862 0.81 +0.1 1,005,095 - Shewana3_0862 0.82 +0.5 1,005,121 - Shewana3_0862 0.86 -1.4 1,005,182 - -1.5 1,005,189 - +0.5 1,005,315 + -1.0 1,005,332 + +2.2 1,005,446 + Shewana3_0863 0.14 -0.7 1,005,602 - Shewana3_0863 0.31 -0.3 1,005,607 + Shewana3_0863 0.32 +0.1 1,005,646 - Shewana3_0863 0.36 +0.9 1,005,744 - Shewana3_0863 0.47 -0.7 1,005,827 + Shewana3_0863 0.56 +0.1 1,005,827 + Shewana3_0863 0.56 +3.0 1,006,180 + +0.1 1,006,183 - +2.1
Or see this region's nucleotide sequence