Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0847 and Shewana3_0848 are separated by 170 nucleotides Shewana3_0848 and Shewana3_0849 are separated by 177 nucleotides
Shewana3_0847: Shewana3_0847 - potassium/proton antiporter (RefSeq), at 983,483 to 985,207
_0847
Shewana3_0848: Shewana3_0848 - lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase (RefSeq), at 985,378 to 986,229
_0848
Shewana3_0849: Shewana3_0849 - bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase (RefSeq), at 986,407 to 987,837
_0849
Position (kb) 985
986
987 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 984.395 kb on + strand, within Shewana3_0847 at 984.599 kb on + strand, within Shewana3_0847 at 984.644 kb on - strand, within Shewana3_0847 at 984.678 kb on - strand, within Shewana3_0847 at 984.909 kb on + strand, within Shewana3_0847 at 985.042 kb on - strand at 985.216 kb on + strand at 985.216 kb on + strand at 985.224 kb on - strand at 985.224 kb on - strand at 986.400 kb on - strand at 986.450 kb on - strand at 986.531 kb on + strand at 986.550 kb on - strand, within Shewana3_0849 at 986.550 kb on - strand, within Shewana3_0849 at 986.617 kb on + strand, within Shewana3_0849 at 986.717 kb on + strand, within Shewana3_0849 at 986.717 kb on + strand, within Shewana3_0849 at 986.725 kb on - strand, within Shewana3_0849 at 986.725 kb on - strand, within Shewana3_0849 at 986.785 kb on + strand, within Shewana3_0849 at 986.829 kb on - strand, within Shewana3_0849 at 986.840 kb on + strand, within Shewana3_0849 at 986.840 kb on + strand, within Shewana3_0849 at 986.848 kb on - strand, within Shewana3_0849 at 986.969 kb on + strand, within Shewana3_0849 at 987.026 kb on + strand, within Shewana3_0849 at 987.086 kb on - strand, within Shewana3_0849 at 987.096 kb on - strand, within Shewana3_0849 at 987.096 kb on - strand, within Shewana3_0849 at 987.112 kb on + strand, within Shewana3_0849 at 987.112 kb on + strand, within Shewana3_0849 at 987.118 kb on + strand, within Shewana3_0849 at 987.119 kb on + strand, within Shewana3_0849 at 987.136 kb on + strand, within Shewana3_0849 at 987.172 kb on - strand, within Shewana3_0849 at 987.172 kb on - strand, within Shewana3_0849
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 984,395 + Shewana3_0847 0.53 +0.1 984,599 + Shewana3_0847 0.65 -0.1 984,644 - Shewana3_0847 0.67 +0.3 984,678 - Shewana3_0847 0.69 +2.1 984,909 + Shewana3_0847 0.83 +0.5 985,042 - +1.1 985,216 + -0.4 985,216 + +0.2 985,224 - -0.5 985,224 - +0.9 986,400 - +3.4 986,450 - +0.0 986,531 + +2.6 986,550 - Shewana3_0849 0.10 +4.1 986,550 - Shewana3_0849 0.10 +2.0 986,617 + Shewana3_0849 0.15 +4.0 986,717 + Shewana3_0849 0.22 +3.9 986,717 + Shewana3_0849 0.22 +3.9 986,725 - Shewana3_0849 0.22 +2.3 986,725 - Shewana3_0849 0.22 +3.1 986,785 + Shewana3_0849 0.26 +3.4 986,829 - Shewana3_0849 0.29 +1.7 986,840 + Shewana3_0849 0.30 +3.9 986,840 + Shewana3_0849 0.30 +3.8 986,848 - Shewana3_0849 0.31 +2.8 986,969 + Shewana3_0849 0.39 +3.8 987,026 + Shewana3_0849 0.43 +4.1 987,086 - Shewana3_0849 0.47 +0.4 987,096 - Shewana3_0849 0.48 +4.0 987,096 - Shewana3_0849 0.48 +1.5 987,112 + Shewana3_0849 0.49 +4.1 987,112 + Shewana3_0849 0.49 +2.5 987,118 + Shewana3_0849 0.50 +2.5 987,119 + Shewana3_0849 0.50 +2.2 987,136 + Shewana3_0849 0.51 +3.7 987,172 - Shewana3_0849 0.53 +2.7 987,172 - Shewana3_0849 0.53 +3.1
Or see this region's nucleotide sequence