Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0841 and Shewana3_0842 overlap by 4 nucleotides Shewana3_0842 and Shewana3_0843 are separated by 161 nucleotides
Shewana3_0841: Shewana3_0841 - peptidase M16 domain-containing protein (RefSeq), at 973,705 to 975,243
_0841
Shewana3_0842: Shewana3_0842 - peptidase M16 domain-containing protein (RefSeq), at 975,240 to 976,655
_0842
Shewana3_0843: Shewana3_0843 - hypothetical protein (RefSeq), at 976,817 to 977,644
_0843
Position (kb) 975
976
977 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 974.250 kb on - strand, within Shewana3_0841 at 974.406 kb on - strand, within Shewana3_0841 at 974.424 kb on + strand, within Shewana3_0841 at 974.439 kb on - strand, within Shewana3_0841 at 974.503 kb on - strand, within Shewana3_0841 at 974.556 kb on - strand, within Shewana3_0841 at 974.556 kb on - strand, within Shewana3_0841 at 974.556 kb on - strand, within Shewana3_0841 at 974.556 kb on - strand, within Shewana3_0841 at 974.577 kb on + strand, within Shewana3_0841 at 974.594 kb on + strand, within Shewana3_0841 at 974.618 kb on + strand, within Shewana3_0841 at 974.803 kb on + strand, within Shewana3_0841 at 974.803 kb on + strand, within Shewana3_0841 at 974.803 kb on + strand, within Shewana3_0841 at 974.806 kb on - strand, within Shewana3_0841 at 974.811 kb on - strand, within Shewana3_0841 at 974.812 kb on + strand, within Shewana3_0841 at 974.940 kb on + strand, within Shewana3_0841 at 974.948 kb on + strand, within Shewana3_0841 at 974.958 kb on + strand, within Shewana3_0841 at 974.966 kb on - strand, within Shewana3_0841 at 974.973 kb on + strand, within Shewana3_0841 at 975.005 kb on - strand, within Shewana3_0841 at 975.165 kb on + strand at 975.262 kb on - strand at 975.319 kb on - strand at 975.332 kb on + strand at 975.337 kb on + strand at 975.340 kb on - strand at 975.345 kb on - strand at 975.385 kb on - strand, within Shewana3_0842 at 975.400 kb on + strand, within Shewana3_0842 at 975.408 kb on - strand, within Shewana3_0842 at 975.539 kb on + strand, within Shewana3_0842 at 975.547 kb on - strand, within Shewana3_0842 at 975.859 kb on - strand, within Shewana3_0842 at 975.898 kb on + strand, within Shewana3_0842 at 975.906 kb on - strand, within Shewana3_0842 at 975.908 kb on + strand, within Shewana3_0842 at 975.908 kb on + strand, within Shewana3_0842 at 975.916 kb on - strand, within Shewana3_0842 at 975.983 kb on - strand, within Shewana3_0842 at 976.057 kb on - strand, within Shewana3_0842 at 976.096 kb on + strand, within Shewana3_0842 at 976.096 kb on + strand, within Shewana3_0842 at 976.096 kb on + strand, within Shewana3_0842 at 976.096 kb on + strand, within Shewana3_0842 at 976.096 kb on + strand, within Shewana3_0842 at 976.096 kb on + strand, within Shewana3_0842 at 976.096 kb on + strand, within Shewana3_0842 at 976.104 kb on - strand, within Shewana3_0842 at 976.104 kb on - strand, within Shewana3_0842 at 976.104 kb on - strand, within Shewana3_0842 at 976.104 kb on - strand, within Shewana3_0842 at 976.222 kb on - strand, within Shewana3_0842 at 976.250 kb on + strand, within Shewana3_0842 at 976.257 kb on + strand, within Shewana3_0842 at 976.258 kb on - strand, within Shewana3_0842 at 976.265 kb on - strand, within Shewana3_0842 at 976.265 kb on - strand, within Shewana3_0842 at 976.269 kb on + strand, within Shewana3_0842 at 976.351 kb on + strand, within Shewana3_0842 at 976.458 kb on - strand, within Shewana3_0842 at 976.470 kb on + strand, within Shewana3_0842 at 976.487 kb on - strand, within Shewana3_0842 at 976.603 kb on + strand at 976.611 kb on - strand at 976.712 kb on + strand at 976.790 kb on + strand at 976.816 kb on - strand at 976.827 kb on - strand at 976.971 kb on + strand, within Shewana3_0843 at 977.001 kb on + strand, within Shewana3_0843 at 977.059 kb on + strand, within Shewana3_0843 at 977.059 kb on + strand, within Shewana3_0843 at 977.225 kb on + strand, within Shewana3_0843 at 977.330 kb on + strand, within Shewana3_0843 at 977.404 kb on - strand, within Shewana3_0843 at 977.518 kb on + strand, within Shewana3_0843 at 977.553 kb on + strand, within Shewana3_0843
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 974,250 - Shewana3_0841 0.35 +0.1 974,406 - Shewana3_0841 0.46 -0.8 974,424 + Shewana3_0841 0.47 +1.2 974,439 - Shewana3_0841 0.48 -1.9 974,503 - Shewana3_0841 0.52 -1.2 974,556 - Shewana3_0841 0.55 -0.5 974,556 - Shewana3_0841 0.55 +1.0 974,556 - Shewana3_0841 0.55 +0.5 974,556 - Shewana3_0841 0.55 -1.2 974,577 + Shewana3_0841 0.57 -0.4 974,594 + Shewana3_0841 0.58 -0.3 974,618 + Shewana3_0841 0.59 -0.3 974,803 + Shewana3_0841 0.71 +0.2 974,803 + Shewana3_0841 0.71 +0.0 974,803 + Shewana3_0841 0.71 -0.3 974,806 - Shewana3_0841 0.72 -0.1 974,811 - Shewana3_0841 0.72 +2.0 974,812 + Shewana3_0841 0.72 +0.5 974,940 + Shewana3_0841 0.80 +0.8 974,948 + Shewana3_0841 0.81 -0.0 974,958 + Shewana3_0841 0.81 -0.2 974,966 - Shewana3_0841 0.82 -1.7 974,973 + Shewana3_0841 0.82 +0.4 975,005 - Shewana3_0841 0.84 -1.0 975,165 + -0.4 975,262 - +1.4 975,319 - +0.0 975,332 + -0.2 975,337 + +0.1 975,340 - +0.7 975,345 - +0.4 975,385 - Shewana3_0842 0.10 -0.4 975,400 + Shewana3_0842 0.11 -0.3 975,408 - Shewana3_0842 0.12 -0.5 975,539 + Shewana3_0842 0.21 -0.2 975,547 - Shewana3_0842 0.22 -0.3 975,859 - Shewana3_0842 0.44 +0.4 975,898 + Shewana3_0842 0.46 +0.2 975,906 - Shewana3_0842 0.47 +6.1 975,908 + Shewana3_0842 0.47 -0.7 975,908 + Shewana3_0842 0.47 +0.0 975,916 - Shewana3_0842 0.48 +0.2 975,983 - Shewana3_0842 0.52 -0.2 976,057 - Shewana3_0842 0.58 +0.5 976,096 + Shewana3_0842 0.60 -1.7 976,096 + Shewana3_0842 0.60 +0.1 976,096 + Shewana3_0842 0.60 -0.5 976,096 + Shewana3_0842 0.60 -1.8 976,096 + Shewana3_0842 0.60 -0.5 976,096 + Shewana3_0842 0.60 -0.6 976,096 + Shewana3_0842 0.60 -0.5 976,104 - Shewana3_0842 0.61 +1.2 976,104 - Shewana3_0842 0.61 -0.2 976,104 - Shewana3_0842 0.61 -0.5 976,104 - Shewana3_0842 0.61 +0.4 976,222 - Shewana3_0842 0.69 -1.2 976,250 + Shewana3_0842 0.71 +0.3 976,257 + Shewana3_0842 0.72 +1.4 976,258 - Shewana3_0842 0.72 +0.7 976,265 - Shewana3_0842 0.72 -1.8 976,265 - Shewana3_0842 0.72 -0.5 976,269 + Shewana3_0842 0.73 +0.4 976,351 + Shewana3_0842 0.78 -0.1 976,458 - Shewana3_0842 0.86 -0.6 976,470 + Shewana3_0842 0.87 +6.1 976,487 - Shewana3_0842 0.88 -0.9 976,603 + +0.3 976,611 - +0.2 976,712 + +0.8 976,790 + +0.2 976,816 - -0.1 976,827 - -1.0 976,971 + Shewana3_0843 0.19 +1.6 977,001 + Shewana3_0843 0.22 -1.2 977,059 + Shewana3_0843 0.29 +0.0 977,059 + Shewana3_0843 0.29 -0.1 977,225 + Shewana3_0843 0.49 -0.5 977,330 + Shewana3_0843 0.62 +0.3 977,404 - Shewana3_0843 0.71 +1.2 977,518 + Shewana3_0843 0.85 -0.3 977,553 + Shewana3_0843 0.89 +0.3
Or see this region's nucleotide sequence