Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0812 and Shewana3_0813 overlap by 4 nucleotides Shewana3_0813 and Shewana3_0814 are separated by 52 nucleotides Shewana3_0814 and Shewana3_0815 are separated by 30 nucleotides
Shewana3_0812: Shewana3_0812 - cysteine/glutathione ABC transporter membrane/ATP-binding component (RefSeq), at 938,660 to 940,621
_0812
Shewana3_0813: Shewana3_0813 - cysteine/glutathione ABC transporter membrane/ATP-binding component (RefSeq), at 940,618 to 942,369
_0813
Shewana3_0814: Shewana3_0814 - putative adenylyl cyclase CyaB (RefSeq), at 942,422 to 943,063
_0814
Shewana3_0815: Shewana3_0815 - IS4 family transposase (RefSeq), at 943,094 to 944,707
_0815
Position (kb) 940
941
942
943 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6
7 at 939.650 kb on - strand, within Shewana3_0812 at 939.669 kb on - strand, within Shewana3_0812 at 940.034 kb on - strand, within Shewana3_0812 at 940.327 kb on - strand, within Shewana3_0812 at 940.396 kb on + strand, within Shewana3_0812 at 940.450 kb on + strand at 940.458 kb on - strand at 940.647 kb on - strand at 940.669 kb on - strand at 940.960 kb on + strand, within Shewana3_0813 at 940.978 kb on - strand, within Shewana3_0813 at 941.094 kb on + strand, within Shewana3_0813 at 941.297 kb on + strand, within Shewana3_0813 at 941.297 kb on + strand, within Shewana3_0813 at 941.305 kb on - strand, within Shewana3_0813 at 941.374 kb on - strand, within Shewana3_0813 at 941.482 kb on + strand, within Shewana3_0813 at 941.686 kb on + strand, within Shewana3_0813 at 941.871 kb on - strand, within Shewana3_0813 at 941.893 kb on - strand, within Shewana3_0813 at 942.114 kb on - strand, within Shewana3_0813 at 942.260 kb on - strand at 942.316 kb on - strand at 942.318 kb on - strand at 942.424 kb on + strand at 942.432 kb on - strand at 942.583 kb on + strand, within Shewana3_0814 at 942.617 kb on + strand, within Shewana3_0814
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 939,650 - Shewana3_0812 0.50 +1.6 939,669 - Shewana3_0812 0.51 +1.0 940,034 - Shewana3_0812 0.70 +0.1 940,327 - Shewana3_0812 0.85 +1.6 940,396 + Shewana3_0812 0.88 -0.5 940,450 + -0.4 940,458 - -0.5 940,647 - -0.0 940,669 - +0.1 940,960 + Shewana3_0813 0.20 +0.5 940,978 - Shewana3_0813 0.21 +1.6 941,094 + Shewana3_0813 0.27 +1.4 941,297 + Shewana3_0813 0.39 +0.7 941,297 + Shewana3_0813 0.39 +1.6 941,305 - Shewana3_0813 0.39 +1.4 941,374 - Shewana3_0813 0.43 -0.3 941,482 + Shewana3_0813 0.49 +0.3 941,686 + Shewana3_0813 0.61 +1.0 941,871 - Shewana3_0813 0.72 -0.3 941,893 - Shewana3_0813 0.73 +7.0 942,114 - Shewana3_0813 0.85 +1.5 942,260 - +1.0 942,316 - +1.0 942,318 - -0.5 942,424 + +0.6 942,432 - -0.0 942,583 + Shewana3_0814 0.25 -0.6 942,617 + Shewana3_0814 0.30 -0.0
Or see this region's nucleotide sequence