Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0811 and Shewana3_0812 are separated by 247 nucleotides Shewana3_0812 and Shewana3_0813 overlap by 4 nucleotides
Shewana3_0811: Shewana3_0811 - hypothetical protein (RefSeq), at 937,366 to 938,412
_0811
Shewana3_0812: Shewana3_0812 - cysteine/glutathione ABC transporter membrane/ATP-binding component (RefSeq), at 938,660 to 940,621
_0812
Shewana3_0813: Shewana3_0813 - cysteine/glutathione ABC transporter membrane/ATP-binding component (RefSeq), at 940,618 to 942,369
_0813
Position (kb) 938
939
940
941 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6
7 at 937.666 kb on + strand, within Shewana3_0811 at 937.692 kb on - strand, within Shewana3_0811 at 937.703 kb on - strand, within Shewana3_0811 at 937.752 kb on + strand, within Shewana3_0811 at 937.756 kb on - strand, within Shewana3_0811 at 937.911 kb on + strand, within Shewana3_0811 at 938.054 kb on - strand, within Shewana3_0811 at 938.180 kb on + strand, within Shewana3_0811 at 938.363 kb on + strand at 938.371 kb on - strand at 938.432 kb on - strand at 938.515 kb on + strand at 938.526 kb on + strand at 938.874 kb on - strand, within Shewana3_0812 at 939.188 kb on + strand, within Shewana3_0812 at 939.341 kb on - strand, within Shewana3_0812 at 939.359 kb on - strand, within Shewana3_0812 at 939.650 kb on - strand, within Shewana3_0812 at 939.669 kb on - strand, within Shewana3_0812 at 940.034 kb on - strand, within Shewana3_0812 at 940.327 kb on - strand, within Shewana3_0812 at 940.396 kb on + strand, within Shewana3_0812 at 940.450 kb on + strand at 940.458 kb on - strand at 940.647 kb on - strand at 940.669 kb on - strand at 940.960 kb on + strand, within Shewana3_0813 at 940.978 kb on - strand, within Shewana3_0813 at 941.094 kb on + strand, within Shewana3_0813 at 941.297 kb on + strand, within Shewana3_0813 at 941.297 kb on + strand, within Shewana3_0813 at 941.305 kb on - strand, within Shewana3_0813 at 941.374 kb on - strand, within Shewana3_0813 at 941.482 kb on + strand, within Shewana3_0813
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 937,666 + Shewana3_0811 0.29 +0.2 937,692 - Shewana3_0811 0.31 +1.1 937,703 - Shewana3_0811 0.32 -1.3 937,752 + Shewana3_0811 0.37 +0.9 937,756 - Shewana3_0811 0.37 +1.6 937,911 + Shewana3_0811 0.52 +6.9 938,054 - Shewana3_0811 0.66 -0.5 938,180 + Shewana3_0811 0.78 -0.5 938,363 + -0.9 938,371 - -1.3 938,432 - -0.0 938,515 + -0.1 938,526 + -1.7 938,874 - Shewana3_0812 0.11 +1.4 939,188 + Shewana3_0812 0.27 +0.1 939,341 - Shewana3_0812 0.35 +1.1 939,359 - Shewana3_0812 0.36 +1.4 939,650 - Shewana3_0812 0.50 +1.6 939,669 - Shewana3_0812 0.51 +1.0 940,034 - Shewana3_0812 0.70 +0.1 940,327 - Shewana3_0812 0.85 +1.6 940,396 + Shewana3_0812 0.88 -0.5 940,450 + -0.4 940,458 - -0.5 940,647 - -0.0 940,669 - +0.1 940,960 + Shewana3_0813 0.20 +0.5 940,978 - Shewana3_0813 0.21 +1.6 941,094 + Shewana3_0813 0.27 +1.4 941,297 + Shewana3_0813 0.39 +0.7 941,297 + Shewana3_0813 0.39 +1.6 941,305 - Shewana3_0813 0.39 +1.4 941,374 - Shewana3_0813 0.43 -0.3 941,482 + Shewana3_0813 0.49 +0.3
Or see this region's nucleotide sequence