Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0806 and Shewana3_0807 are separated by 110 nucleotides Shewana3_0807 and Shewana3_0808 are separated by 67 nucleotides Shewana3_0808 and Shewana3_0809 are separated by 305 nucleotides
Shewana3_0806: Shewana3_0806 - peptidase M19, renal dipeptidase (RefSeq), at 930,005 to 931,168
_0806
Shewana3_0807: Shewana3_0807 - Fe-S metabolism associated SufE (RefSeq), at 931,279 to 931,722
_0807
Shewana3_0808: Shewana3_0808 - cysteine desulfurase (RefSeq), at 931,790 to 933,037
_0808
Shewana3_0809: Shewana3_0809 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 933,343 to 935,043
_0809
Position (kb)
931
932
933
934 Strain fitness (log2 ratio)
-1
0
1
2
3
4
5
6 at 931.217 kb on + strand at 931.217 kb on + strand at 931.340 kb on + strand, within Shewana3_0807 at 931.394 kb on - strand, within Shewana3_0807 at 931.427 kb on + strand, within Shewana3_0807 at 931.442 kb on + strand, within Shewana3_0807 at 931.458 kb on - strand, within Shewana3_0807 at 931.545 kb on - strand, within Shewana3_0807 at 931.788 kb on + strand at 931.796 kb on - strand at 931.796 kb on - strand at 931.796 kb on - strand at 931.891 kb on + strand at 931.899 kb on - strand at 931.899 kb on - strand at 931.899 kb on - strand at 931.910 kb on + strand at 931.996 kb on + strand, within Shewana3_0808 at 932.042 kb on - strand, within Shewana3_0808 at 932.071 kb on + strand, within Shewana3_0808 at 932.172 kb on - strand, within Shewana3_0808 at 932.511 kb on - strand, within Shewana3_0808 at 932.528 kb on + strand, within Shewana3_0808 at 932.567 kb on - strand, within Shewana3_0808 at 932.583 kb on + strand, within Shewana3_0808 at 932.631 kb on + strand, within Shewana3_0808 at 932.727 kb on - strand, within Shewana3_0808 at 932.873 kb on - strand, within Shewana3_0808 at 932.873 kb on - strand, within Shewana3_0808 at 932.936 kb on - strand at 932.984 kb on + strand at 932.984 kb on + strand at 933.015 kb on - strand at 933.162 kb on - strand at 933.319 kb on + strand at 933.518 kb on - strand, within Shewana3_0809 at 933.520 kb on - strand, within Shewana3_0809 at 933.953 kb on + strand, within Shewana3_0809 at 933.963 kb on + strand, within Shewana3_0809 at 933.963 kb on + strand, within Shewana3_0809 at 933.971 kb on - strand, within Shewana3_0809 at 934.003 kb on - strand, within Shewana3_0809
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 931,217 + -0.9 931,217 + -0.7 931,340 + Shewana3_0807 0.14 +0.7 931,394 - Shewana3_0807 0.26 +0.2 931,427 + Shewana3_0807 0.33 +1.4 931,442 + Shewana3_0807 0.37 -0.3 931,458 - Shewana3_0807 0.40 +0.1 931,545 - Shewana3_0807 0.60 +0.6 931,788 + +0.1 931,796 - +0.1 931,796 - -0.8 931,796 - -0.8 931,891 + -0.7 931,899 - +0.4 931,899 - +0.7 931,899 - -0.6 931,910 + +1.5 931,996 + Shewana3_0808 0.17 +0.5 932,042 - Shewana3_0808 0.20 +1.2 932,071 + Shewana3_0808 0.23 +6.6 932,172 - Shewana3_0808 0.31 +5.2 932,511 - Shewana3_0808 0.58 +0.1 932,528 + Shewana3_0808 0.59 -0.4 932,567 - Shewana3_0808 0.62 +0.2 932,583 + Shewana3_0808 0.64 +0.6 932,631 + Shewana3_0808 0.67 +1.1 932,727 - Shewana3_0808 0.75 +1.6 932,873 - Shewana3_0808 0.87 -0.0 932,873 - Shewana3_0808 0.87 +1.2 932,936 - +0.9 932,984 + +0.6 932,984 + -0.0 933,015 - -1.3 933,162 - -1.3 933,319 + +0.2 933,518 - Shewana3_0809 0.10 +0.3 933,520 - Shewana3_0809 0.10 +2.5 933,953 + Shewana3_0809 0.36 +1.2 933,963 + Shewana3_0809 0.36 -1.2 933,963 + Shewana3_0809 0.36 +1.3 933,971 - Shewana3_0809 0.37 -0.7 934,003 - Shewana3_0809 0.39 -0.7
Or see this region's nucleotide sequence