Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0755 and Shewana3_0756 are separated by 72 nucleotides Shewana3_0756 and Shewana3_0757 are separated by 41 nucleotides Shewana3_0757 and Shewana3_0758 are separated by 234 nucleotides
Shewana3_0755: Shewana3_0755 - glutathione S-transferase domain-containing protein (RefSeq), at 876,942 to 877,571
_0755
Shewana3_0756: Shewana3_0756 - hypothetical protein (RefSeq), at 877,644 to 878,144
_0756
Shewana3_0757: Shewana3_0757 - hypothetical protein (RefSeq), at 878,186 to 878,593
_0757
Shewana3_0758: Shewana3_0758 - hypothetical protein (RefSeq), at 878,828 to 879,613
_0758
Position (kb) 878
879 Strain fitness (log2 ratio) -2
-1
0
1 at 877.319 kb on + strand, within Shewana3_0755 at 877.319 kb on + strand, within Shewana3_0755 at 877.327 kb on - strand, within Shewana3_0755 at 877.327 kb on - strand, within Shewana3_0755 at 877.329 kb on + strand, within Shewana3_0755 at 877.337 kb on - strand, within Shewana3_0755 at 877.565 kb on + strand at 877.751 kb on + strand, within Shewana3_0756 at 877.751 kb on + strand, within Shewana3_0756 at 877.814 kb on - strand, within Shewana3_0756 at 878.005 kb on - strand, within Shewana3_0756 at 878.526 kb on - strand, within Shewana3_0757 at 878.578 kb on + strand at 878.625 kb on + strand at 878.700 kb on + strand at 878.801 kb on - strand at 878.881 kb on + strand at 878.910 kb on - strand, within Shewana3_0758 at 878.915 kb on + strand, within Shewana3_0758 at 878.928 kb on - strand, within Shewana3_0758 at 879.124 kb on + strand, within Shewana3_0758 at 879.191 kb on - strand, within Shewana3_0758 at 879.207 kb on - strand, within Shewana3_0758 at 879.281 kb on + strand, within Shewana3_0758 at 879.331 kb on + strand, within Shewana3_0758 at 879.414 kb on - strand, within Shewana3_0758 at 879.532 kb on - strand, within Shewana3_0758
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 877,319 + Shewana3_0755 0.60 -0.3 877,319 + Shewana3_0755 0.60 +0.1 877,327 - Shewana3_0755 0.61 -2.0 877,327 - Shewana3_0755 0.61 +0.3 877,329 + Shewana3_0755 0.61 -0.1 877,337 - Shewana3_0755 0.63 +0.4 877,565 + -0.3 877,751 + Shewana3_0756 0.21 -1.1 877,751 + Shewana3_0756 0.21 +1.4 877,814 - Shewana3_0756 0.34 -1.4 878,005 - Shewana3_0756 0.72 +0.3 878,526 - Shewana3_0757 0.83 -0.6 878,578 + -0.9 878,625 + -0.1 878,700 + -0.6 878,801 - +0.1 878,881 + +0.7 878,910 - Shewana3_0758 0.10 +0.2 878,915 + Shewana3_0758 0.11 +0.0 878,928 - Shewana3_0758 0.13 +0.1 879,124 + Shewana3_0758 0.38 -0.4 879,191 - Shewana3_0758 0.46 -0.4 879,207 - Shewana3_0758 0.48 -0.3 879,281 + Shewana3_0758 0.58 +0.1 879,331 + Shewana3_0758 0.64 -1.0 879,414 - Shewana3_0758 0.75 -1.6 879,532 - Shewana3_0758 0.90 -0.8
Or see this region's nucleotide sequence