Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0748 and Shewana3_0749 are separated by 24 nucleotides Shewana3_0749 and Shewana3_0750 are separated by 66 nucleotides Shewana3_0750 and Shewana3_0751 are separated by 266 nucleotides Shewana3_0751 and Shewana3_0752 are separated by 144 nucleotides
Shewana3_0748: Shewana3_0748 - phosphoesterase, PA-phosphatase related (RefSeq), at 868,504 to 869,031
_0748
Shewana3_0749: Shewana3_0749 - hypothetical protein (RefSeq), at 869,056 to 869,490
_0749
Shewana3_0750: Shewana3_0750 - malate dehydrogenase (RefSeq), at 869,557 to 871,245
_0750
Shewana3_0751: Shewana3_0751 - hypothetical protein (RefSeq), at 871,512 to 871,982
_0751
Shewana3_0752: Shewana3_0752 - putative manganese transporter (RefSeq), at 872,127 to 873,413
_0752
Position (kb)
869
870
871
872 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 868.627 kb on + strand, within Shewana3_0748 at 868.627 kb on + strand, within Shewana3_0748 at 868.627 kb on + strand, within Shewana3_0748 at 868.689 kb on - strand, within Shewana3_0748 at 868.707 kb on + strand, within Shewana3_0748 at 868.792 kb on - strand, within Shewana3_0748 at 868.956 kb on + strand, within Shewana3_0748 at 868.981 kb on + strand at 869.079 kb on - strand at 869.162 kb on - strand, within Shewana3_0749 at 869.395 kb on + strand, within Shewana3_0749 at 869.473 kb on - strand at 869.484 kb on + strand at 869.642 kb on + strand at 869.661 kb on - strand at 869.843 kb on - strand, within Shewana3_0750 at 869.844 kb on - strand, within Shewana3_0750 at 869.844 kb on - strand, within Shewana3_0750 at 869.929 kb on - strand, within Shewana3_0750 at 870.281 kb on + strand, within Shewana3_0750 at 870.700 kb on + strand, within Shewana3_0750 at 870.703 kb on - strand, within Shewana3_0750 at 870.782 kb on - strand, within Shewana3_0750 at 870.872 kb on + strand, within Shewana3_0750 at 870.880 kb on - strand, within Shewana3_0750 at 870.922 kb on + strand, within Shewana3_0750 at 870.978 kb on + strand, within Shewana3_0750 at 871.058 kb on + strand, within Shewana3_0750 at 871.058 kb on + strand, within Shewana3_0750 at 871.226 kb on - strand at 871.252 kb on + strand at 871.254 kb on - strand at 871.632 kb on - strand, within Shewana3_0751 at 871.632 kb on - strand, within Shewana3_0751 at 871.632 kb on - strand, within Shewana3_0751 at 871.826 kb on + strand, within Shewana3_0751 at 871.835 kb on - strand, within Shewana3_0751 at 871.869 kb on - strand, within Shewana3_0751 at 872.076 kb on + strand at 872.084 kb on - strand at 872.084 kb on - strand at 872.241 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 868,627 + Shewana3_0748 0.23 +1.3 868,627 + Shewana3_0748 0.23 -0.2 868,627 + Shewana3_0748 0.23 -2.1 868,689 - Shewana3_0748 0.35 -0.7 868,707 + Shewana3_0748 0.38 +0.2 868,792 - Shewana3_0748 0.55 +3.0 868,956 + Shewana3_0748 0.86 +0.2 868,981 + -0.3 869,079 - +2.0 869,162 - Shewana3_0749 0.24 +2.0 869,395 + Shewana3_0749 0.78 +0.4 869,473 - -0.2 869,484 + -0.1 869,642 + +1.3 869,661 - -0.6 869,843 - Shewana3_0750 0.17 -1.8 869,844 - Shewana3_0750 0.17 -0.5 869,844 - Shewana3_0750 0.17 -0.7 869,929 - Shewana3_0750 0.22 -0.2 870,281 + Shewana3_0750 0.43 +0.7 870,700 + Shewana3_0750 0.68 +1.5 870,703 - Shewana3_0750 0.68 -0.4 870,782 - Shewana3_0750 0.73 +1.4 870,872 + Shewana3_0750 0.78 +2.0 870,880 - Shewana3_0750 0.78 -1.9 870,922 + Shewana3_0750 0.81 -1.4 870,978 + Shewana3_0750 0.84 -1.9 871,058 + Shewana3_0750 0.89 -2.3 871,058 + Shewana3_0750 0.89 +0.1 871,226 - +0.5 871,252 + +0.9 871,254 - -1.3 871,632 - Shewana3_0751 0.25 +0.4 871,632 - Shewana3_0751 0.25 -0.6 871,632 - Shewana3_0751 0.25 -0.6 871,826 + Shewana3_0751 0.67 +1.8 871,835 - Shewana3_0751 0.69 +0.0 871,869 - Shewana3_0751 0.76 -0.8 872,076 + +0.8 872,084 - -0.5 872,084 - -0.1 872,241 - -0.1
Or see this region's nucleotide sequence