Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0733 and Shewana3_0734 are separated by 430 nucleotides Shewana3_0734 and Shewana3_0735 are separated by 416 nucleotides
Shewana3_0733: Shewana3_0733 - porin (RefSeq), at 851,205 to 852,284
_0733
Shewana3_0734: Shewana3_0734 - porin (RefSeq), at 852,715 to 853,779
_0734
Shewana3_0735: Shewana3_0735 - UBA/THIF-type NAD/FAD binding protein (RefSeq), at 854,196 to 855,029
_0735
Position (kb)
852
853
854 Strain fitness (log2 ratio)
-2
-1
0
1 at 851.891 kb on + strand, within Shewana3_0733 at 852.153 kb on + strand, within Shewana3_0733 at 852.237 kb on - strand at 852.400 kb on - strand at 852.435 kb on + strand at 852.588 kb on + strand at 852.862 kb on - strand, within Shewana3_0734 at 852.912 kb on - strand, within Shewana3_0734 at 852.967 kb on - strand, within Shewana3_0734 at 853.112 kb on - strand, within Shewana3_0734 at 853.359 kb on - strand, within Shewana3_0734 at 853.409 kb on - strand, within Shewana3_0734 at 853.592 kb on + strand, within Shewana3_0734 at 853.846 kb on - strand at 853.851 kb on - strand at 853.851 kb on - strand at 853.859 kb on - strand at 854.042 kb on + strand at 854.122 kb on + strand at 854.132 kb on + strand at 854.132 kb on + strand at 854.132 kb on + strand at 854.132 kb on + strand at 854.132 kb on + strand at 854.153 kb on + strand at 854.198 kb on - strand at 854.245 kb on + strand at 854.245 kb on + strand at 854.542 kb on + strand, within Shewana3_0735 at 854.581 kb on + strand, within Shewana3_0735 at 854.675 kb on - strand, within Shewana3_0735
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 851,891 + Shewana3_0733 0.64 +0.6 852,153 + Shewana3_0733 0.88 +1.3 852,237 - -1.7 852,400 - +1.7 852,435 + -2.0 852,588 + -0.7 852,862 - Shewana3_0734 0.14 -0.3 852,912 - Shewana3_0734 0.18 +0.1 852,967 - Shewana3_0734 0.24 +1.7 853,112 - Shewana3_0734 0.37 +0.2 853,359 - Shewana3_0734 0.60 -1.9 853,409 - Shewana3_0734 0.65 +0.3 853,592 + Shewana3_0734 0.82 -0.1 853,846 - -0.8 853,851 - -1.6 853,851 - -0.6 853,859 - +0.2 854,042 + -0.7 854,122 + +0.2 854,132 + +1.3 854,132 + -0.5 854,132 + -0.7 854,132 + -0.1 854,132 + -0.8 854,153 + -0.6 854,198 - +0.2 854,245 + +1.5 854,245 + +0.3 854,542 + Shewana3_0735 0.41 -0.1 854,581 + Shewana3_0735 0.46 -0.3 854,675 - Shewana3_0735 0.57 -0.2
Or see this region's nucleotide sequence