Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0734

Experiment: Paraquat dichloride 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0733 and Shewana3_0734 are separated by 430 nucleotidesShewana3_0734 and Shewana3_0735 are separated by 416 nucleotides Shewana3_0733: Shewana3_0733 - porin (RefSeq), at 851,205 to 852,284 _0733 Shewana3_0734: Shewana3_0734 - porin (RefSeq), at 852,715 to 853,779 _0734 Shewana3_0735: Shewana3_0735 - UBA/THIF-type NAD/FAD binding protein (RefSeq), at 854,196 to 855,029 _0735 Position (kb) 852 853 854Strain fitness (log2 ratio) -2 -1 0 1at 851.891 kb on + strand, within Shewana3_0733at 852.153 kb on + strand, within Shewana3_0733at 852.237 kb on - strandat 852.400 kb on - strandat 852.435 kb on + strandat 852.588 kb on + strandat 852.862 kb on - strand, within Shewana3_0734at 852.912 kb on - strand, within Shewana3_0734at 852.967 kb on - strand, within Shewana3_0734at 853.112 kb on - strand, within Shewana3_0734at 853.359 kb on - strand, within Shewana3_0734at 853.409 kb on - strand, within Shewana3_0734at 853.592 kb on + strand, within Shewana3_0734at 853.846 kb on - strandat 853.851 kb on - strandat 853.851 kb on - strandat 853.859 kb on - strandat 854.042 kb on + strandat 854.122 kb on + strandat 854.132 kb on + strandat 854.132 kb on + strandat 854.132 kb on + strandat 854.132 kb on + strandat 854.132 kb on + strandat 854.153 kb on + strandat 854.198 kb on - strandat 854.245 kb on + strandat 854.245 kb on + strandat 854.542 kb on + strand, within Shewana3_0735at 854.581 kb on + strand, within Shewana3_0735at 854.675 kb on - strand, within Shewana3_0735

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml
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851,891 + Shewana3_0733 0.64 +0.6
852,153 + Shewana3_0733 0.88 +1.3
852,237 - -1.7
852,400 - +1.7
852,435 + -2.0
852,588 + -0.7
852,862 - Shewana3_0734 0.14 -0.3
852,912 - Shewana3_0734 0.18 +0.1
852,967 - Shewana3_0734 0.24 +1.7
853,112 - Shewana3_0734 0.37 +0.2
853,359 - Shewana3_0734 0.60 -1.9
853,409 - Shewana3_0734 0.65 +0.3
853,592 + Shewana3_0734 0.82 -0.1
853,846 - -0.8
853,851 - -1.6
853,851 - -0.6
853,859 - +0.2
854,042 + -0.7
854,122 + +0.2
854,132 + +1.3
854,132 + -0.5
854,132 + -0.7
854,132 + -0.1
854,132 + -0.8
854,153 + -0.6
854,198 - +0.2
854,245 + +1.5
854,245 + +0.3
854,542 + Shewana3_0735 0.41 -0.1
854,581 + Shewana3_0735 0.46 -0.3
854,675 - Shewana3_0735 0.57 -0.2

Or see this region's nucleotide sequence