Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0716 and Shewana3_0717 are separated by 75 nucleotides Shewana3_0717 and Shewana3_0718 are separated by 227 nucleotides
Shewana3_0716: Shewana3_0716 - TonB-dependent siderophore receptor (RefSeq), at 833,315 to 835,510
_0716
Shewana3_0717: Shewana3_0717 - putative hydroxylase (RefSeq), at 835,586 to 836,260
_0717
Shewana3_0718: Shewana3_0718 - tRNA-dihydrouridine synthase A (RefSeq), at 836,488 to 837,492
_0718
Position (kb) 835
836
837 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 834.599 kb on - strand, within Shewana3_0716 at 834.614 kb on - strand, within Shewana3_0716 at 834.735 kb on + strand, within Shewana3_0716 at 834.810 kb on - strand, within Shewana3_0716 at 834.864 kb on - strand, within Shewana3_0716 at 834.936 kb on + strand, within Shewana3_0716 at 835.261 kb on + strand, within Shewana3_0716 at 835.303 kb on - strand at 835.504 kb on + strand at 835.504 kb on + strand at 835.729 kb on + strand, within Shewana3_0717 at 835.827 kb on - strand, within Shewana3_0717 at 836.223 kb on - strand at 836.304 kb on - strand at 836.770 kb on - strand, within Shewana3_0718 at 836.872 kb on - strand, within Shewana3_0718 at 836.889 kb on + strand, within Shewana3_0718 at 836.921 kb on + strand, within Shewana3_0718 at 836.929 kb on - strand, within Shewana3_0718 at 837.029 kb on + strand, within Shewana3_0718 at 837.077 kb on + strand, within Shewana3_0718 at 837.085 kb on - strand, within Shewana3_0718 at 837.148 kb on - strand, within Shewana3_0718 at 837.240 kb on + strand, within Shewana3_0718
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 834,599 - Shewana3_0716 0.58 +3.8 834,614 - Shewana3_0716 0.59 +2.4 834,735 + Shewana3_0716 0.65 +2.6 834,810 - Shewana3_0716 0.68 +3.1 834,864 - Shewana3_0716 0.71 +3.3 834,936 + Shewana3_0716 0.74 +2.7 835,261 + Shewana3_0716 0.89 +3.4 835,303 - +0.3 835,504 + +3.0 835,504 + +2.1 835,729 + Shewana3_0717 0.21 +2.7 835,827 - Shewana3_0717 0.36 +3.7 836,223 - +4.6 836,304 - +0.2 836,770 - Shewana3_0718 0.28 +0.1 836,872 - Shewana3_0718 0.38 -0.9 836,889 + Shewana3_0718 0.40 +0.3 836,921 + Shewana3_0718 0.43 -0.1 836,929 - Shewana3_0718 0.44 -0.8 837,029 + Shewana3_0718 0.54 +0.1 837,077 + Shewana3_0718 0.59 +0.6 837,085 - Shewana3_0718 0.59 +0.4 837,148 - Shewana3_0718 0.66 -0.4 837,240 + Shewana3_0718 0.75 +0.0
Or see this region's nucleotide sequence