Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0696

Experiment: Paraquat dichloride 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0695 and Shewana3_0696 are separated by 108 nucleotidesShewana3_0696 and Shewana3_0697 are separated by 39 nucleotides Shewana3_0695: Shewana3_0695 - adenylosuccinate synthetase (RefSeq), at 810,372 to 811,667 _0695 Shewana3_0696: Shewana3_0696 - Sel1 domain-containing protein (RefSeq), at 811,776 to 812,432 _0696 Shewana3_0697: Shewana3_0697 - RNAse R (RefSeq), at 812,472 to 814,901 _0697 Position (kb) 811 812 813Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6at 810.788 kb on + strand, within Shewana3_0695at 810.827 kb on + strand, within Shewana3_0695at 811.278 kb on + strand, within Shewana3_0695at 811.365 kb on + strand, within Shewana3_0695at 811.465 kb on + strand, within Shewana3_0695at 811.534 kb on + strand, within Shewana3_0695at 811.628 kb on + strandat 811.958 kb on - strand, within Shewana3_0696at 812.042 kb on + strand, within Shewana3_0696at 812.051 kb on - strand, within Shewana3_0696at 812.078 kb on - strand, within Shewana3_0696at 812.262 kb on + strand, within Shewana3_0696at 812.507 kb on - strandat 812.644 kb on + strandat 813.153 kb on - strand, within Shewana3_0697at 813.377 kb on + strand, within Shewana3_0697

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml
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810,788 + Shewana3_0695 0.32 -0.3
810,827 + Shewana3_0695 0.35 +2.8
811,278 + Shewana3_0695 0.70 +1.4
811,365 + Shewana3_0695 0.77 +1.6
811,465 + Shewana3_0695 0.84 +1.9
811,534 + Shewana3_0695 0.90 +1.2
811,628 + +1.1
811,958 - Shewana3_0696 0.28 +4.1
812,042 + Shewana3_0696 0.40 +5.8
812,051 - Shewana3_0696 0.42 +4.4
812,078 - Shewana3_0696 0.46 -0.3
812,262 + Shewana3_0696 0.74 +3.5
812,507 - +1.7
812,644 + +0.9
813,153 - Shewana3_0697 0.28 -0.4
813,377 + Shewana3_0697 0.37 +0.8

Or see this region's nucleotide sequence