Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0669 and Shewana3_0670 overlap by 4 nucleotides Shewana3_0670 and Shewana3_0671 are separated by 2 nucleotides Shewana3_0671 and Shewana3_0672 are separated by 28 nucleotides Shewana3_0672 and Shewana3_0673 are separated by 105 nucleotides Shewana3_0673 and Shewana3_0674 overlap by 4 nucleotides
Shewana3_0669: Shewana3_0669 - hypothetical protein (RefSeq), at 790,351 to 791,205
_0669
Shewana3_0670: Shewana3_0670 - PTS IIA-like nitrogen-regulatory protein PtsN (RefSeq), at 791,202 to 791,645
_0670
Shewana3_0671: Shewana3_0671 - sigma 54 modulation protein / SSU ribosomal protein S30P (RefSeq), at 791,648 to 791,935
_0671
Shewana3_0672: Shewana3_0672 - RNA polymerase factor sigma-54 (RefSeq), at 791,964 to 793,439
_0672
Shewana3_0673: Shewana3_0673 - ABC transporter related (RefSeq), at 793,545 to 794,276
_0673
Shewana3_0674: Shewana3_0674 - OstA family protein (RefSeq), at 794,273 to 794,824
_0674
Position (kb) 791
792
793
794 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8
9
10 at 790.968 kb on + strand, within Shewana3_0669 at 791.077 kb on - strand, within Shewana3_0669 at 791.128 kb on - strand at 791.131 kb on + strand at 791.509 kb on - strand, within Shewana3_0670 at 791.541 kb on + strand, within Shewana3_0670 at 791.541 kb on + strand, within Shewana3_0670 at 791.680 kb on - strand, within Shewana3_0671 at 791.719 kb on - strand, within Shewana3_0671 at 791.761 kb on - strand, within Shewana3_0671 at 791.818 kb on - strand, within Shewana3_0671 at 791.837 kb on - strand, within Shewana3_0671 at 791.837 kb on - strand, within Shewana3_0671 at 791.877 kb on + strand, within Shewana3_0671 at 791.877 kb on + strand, within Shewana3_0671 at 791.885 kb on - strand, within Shewana3_0671 at 791.885 kb on - strand, within Shewana3_0671 at 791.885 kb on - strand, within Shewana3_0671 at 791.923 kb on + strand at 791.981 kb on + strand at 792.007 kb on + strand at 792.145 kb on + strand, within Shewana3_0672 at 792.167 kb on - strand, within Shewana3_0672 at 792.169 kb on + strand, within Shewana3_0672 at 792.492 kb on - strand, within Shewana3_0672 at 792.543 kb on - strand, within Shewana3_0672 at 792.649 kb on - strand, within Shewana3_0672 at 792.714 kb on + strand, within Shewana3_0672 at 792.759 kb on - strand, within Shewana3_0672 at 792.771 kb on - strand, within Shewana3_0672 at 792.865 kb on + strand, within Shewana3_0672 at 792.892 kb on + strand, within Shewana3_0672 at 792.906 kb on - strand, within Shewana3_0672 at 793.322 kb on - strand at 793.415 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 790,968 + Shewana3_0669 0.72 +1.6 791,077 - Shewana3_0669 0.85 -1.9 791,128 - -1.2 791,131 + +2.0 791,509 - Shewana3_0670 0.69 +2.0 791,541 + Shewana3_0670 0.76 +0.8 791,541 + Shewana3_0670 0.76 +1.0 791,680 - Shewana3_0671 0.11 -0.9 791,719 - Shewana3_0671 0.25 -0.1 791,761 - Shewana3_0671 0.39 +0.6 791,818 - Shewana3_0671 0.59 +0.0 791,837 - Shewana3_0671 0.66 +0.5 791,837 - Shewana3_0671 0.66 -0.3 791,877 + Shewana3_0671 0.80 +0.8 791,877 + Shewana3_0671 0.80 +2.5 791,885 - Shewana3_0671 0.82 +0.1 791,885 - Shewana3_0671 0.82 +0.5 791,885 - Shewana3_0671 0.82 -0.5 791,923 + -1.0 791,981 + +9.3 792,007 + +9.8 792,145 + Shewana3_0672 0.12 +9.6 792,167 - Shewana3_0672 0.14 +9.9 792,169 + Shewana3_0672 0.14 +7.6 792,492 - Shewana3_0672 0.36 +9.6 792,543 - Shewana3_0672 0.39 +9.8 792,649 - Shewana3_0672 0.46 +9.2 792,714 + Shewana3_0672 0.51 +9.4 792,759 - Shewana3_0672 0.54 +9.7 792,771 - Shewana3_0672 0.55 +8.3 792,865 + Shewana3_0672 0.61 +9.1 792,892 + Shewana3_0672 0.63 +9.0 792,906 - Shewana3_0672 0.64 +9.6 793,322 - +9.8 793,415 + +8.8
Or see this region's nucleotide sequence