Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0661 and Shewana3_0662 are separated by 159 nucleotides Shewana3_0662 and Shewana3_0663 are separated by 270 nucleotides Shewana3_0663 and Shewana3_0664 are separated by 725 nucleotides
Shewana3_0661: Shewana3_0661 - hypothetical protein (RefSeq), at 782,844 to 783,428
_0661
Shewana3_0662: Shewana3_0662 - hypothetical protein (RefSeq), at 783,588 to 783,935
_0662
Shewana3_0663: Shewana3_0663 - protein of unknown function RIO1 (RefSeq), at 784,206 to 785,063
_0663
Shewana3_0664: Shewana3_0664 - transposase IS3/IS911 family protein (RefSeq), at 785,789 to 786,022
_0664
Position (kb) 784
785
786 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6 at 783.340 kb on - strand, within Shewana3_0661 at 783.352 kb on - strand, within Shewana3_0661 at 783.385 kb on - strand at 783.534 kb on + strand at 783.814 kb on - strand, within Shewana3_0662 at 783.921 kb on - strand at 783.944 kb on + strand at 784.183 kb on - strand at 784.192 kb on + strand at 784.200 kb on - strand at 784.260 kb on + strand at 784.297 kb on - strand, within Shewana3_0663 at 784.344 kb on - strand, within Shewana3_0663 at 784.371 kb on - strand, within Shewana3_0663 at 784.371 kb on - strand, within Shewana3_0663 at 784.425 kb on - strand, within Shewana3_0663 at 784.533 kb on - strand, within Shewana3_0663 at 784.604 kb on - strand, within Shewana3_0663 at 784.677 kb on + strand, within Shewana3_0663 at 784.677 kb on + strand, within Shewana3_0663 at 784.692 kb on + strand, within Shewana3_0663 at 784.692 kb on + strand, within Shewana3_0663 at 784.772 kb on - strand, within Shewana3_0663 at 784.785 kb on + strand, within Shewana3_0663 at 784.785 kb on + strand, within Shewana3_0663 at 784.785 kb on + strand, within Shewana3_0663 at 784.855 kb on + strand, within Shewana3_0663 at 784.956 kb on + strand, within Shewana3_0663 at 785.162 kb on - strand at 785.255 kb on - strand at 785.343 kb on + strand at 785.343 kb on + strand at 785.351 kb on - strand at 785.401 kb on + strand at 785.623 kb on + strand at 785.638 kb on - strand at 785.721 kb on + strand at 785.742 kb on - strand at 785.787 kb on + strand at 785.801 kb on + strand at 785.821 kb on + strand, within Shewana3_0664 at 786.038 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 783,340 - Shewana3_0661 0.85 +1.0 783,352 - Shewana3_0661 0.87 -1.2 783,385 - +1.3 783,534 + -0.3 783,814 - Shewana3_0662 0.65 -0.4 783,921 - +5.9 783,944 + +3.8 784,183 - -0.0 784,192 + -0.2 784,200 - -0.7 784,260 + +2.1 784,297 - Shewana3_0663 0.11 +1.3 784,344 - Shewana3_0663 0.16 -0.0 784,371 - Shewana3_0663 0.19 +1.3 784,371 - Shewana3_0663 0.19 +0.9 784,425 - Shewana3_0663 0.26 -0.0 784,533 - Shewana3_0663 0.38 +0.4 784,604 - Shewana3_0663 0.46 +2.6 784,677 + Shewana3_0663 0.55 +1.1 784,677 + Shewana3_0663 0.55 +1.0 784,692 + Shewana3_0663 0.57 +0.8 784,692 + Shewana3_0663 0.57 +1.6 784,772 - Shewana3_0663 0.66 +2.0 784,785 + Shewana3_0663 0.67 +1.6 784,785 + Shewana3_0663 0.67 +1.3 784,785 + Shewana3_0663 0.67 +1.5 784,855 + Shewana3_0663 0.76 +1.4 784,956 + Shewana3_0663 0.87 +1.2 785,162 - +0.5 785,255 - +0.9 785,343 + -0.7 785,343 + -0.5 785,351 - +0.4 785,401 + -1.0 785,623 + +0.3 785,638 - -0.4 785,721 + +1.2 785,742 - -0.1 785,787 + +1.1 785,801 + -1.1 785,821 + Shewana3_0664 0.14 -1.3 786,038 + +2.6
Or see this region's nucleotide sequence