Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0653 and Shewana3_0654 are separated by 54 nucleotides Shewana3_0654 and Shewana3_0655 are separated by 168 nucleotides Shewana3_0655 and Shewana3_0656 are separated by 88 nucleotides
Shewana3_0653: Shewana3_0653 - succinylglutamate desuccinylase/aspartoacylase (RefSeq), at 772,874 to 773,989
_0653
Shewana3_0654: Shewana3_0654 - Mg2 transporter protein, CorA family protein (RefSeq), at 774,044 to 775,021
_0654
Shewana3_0655: Shewana3_0655 - hypothetical protein (RefSeq), at 775,190 to 775,564
_0655
Shewana3_0656: Shewana3_0656 - two component LuxR family transcriptional regulator (RefSeq), at 775,653 to 776,282
_0656
Position (kb) 774
775
776 Strain fitness (log2 ratio) -1
0
1 at 773.112 kb on + strand, within Shewana3_0653 at 773.262 kb on - strand, within Shewana3_0653 at 773.354 kb on + strand, within Shewana3_0653 at 773.355 kb on - strand, within Shewana3_0653 at 773.429 kb on + strand, within Shewana3_0653 at 773.526 kb on - strand, within Shewana3_0653 at 773.595 kb on + strand, within Shewana3_0653 at 773.733 kb on + strand, within Shewana3_0653 at 773.784 kb on - strand, within Shewana3_0653 at 773.859 kb on - strand, within Shewana3_0653 at 773.948 kb on - strand at 773.950 kb on + strand at 774.743 kb on - strand, within Shewana3_0654 at 774.758 kb on + strand, within Shewana3_0654 at 774.854 kb on + strand, within Shewana3_0654 at 774.948 kb on - strand at 774.948 kb on - strand at 774.955 kb on - strand at 774.979 kb on + strand at 774.982 kb on - strand at 774.987 kb on - strand at 775.102 kb on + strand at 775.207 kb on + strand at 775.237 kb on - strand, within Shewana3_0655 at 775.239 kb on + strand, within Shewana3_0655 at 775.262 kb on - strand, within Shewana3_0655 at 775.273 kb on - strand, within Shewana3_0655 at 775.386 kb on + strand, within Shewana3_0655 at 775.537 kb on + strand at 775.537 kb on + strand at 775.758 kb on - strand, within Shewana3_0656
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 773,112 + Shewana3_0653 0.21 +0.4 773,262 - Shewana3_0653 0.35 -0.7 773,354 + Shewana3_0653 0.43 +0.6 773,355 - Shewana3_0653 0.43 +0.2 773,429 + Shewana3_0653 0.50 +0.0 773,526 - Shewana3_0653 0.58 +1.5 773,595 + Shewana3_0653 0.65 -0.7 773,733 + Shewana3_0653 0.77 +0.2 773,784 - Shewana3_0653 0.82 +0.0 773,859 - Shewana3_0653 0.88 +1.0 773,948 - -0.3 773,950 + +0.3 774,743 - Shewana3_0654 0.71 -0.5 774,758 + Shewana3_0654 0.73 -1.0 774,854 + Shewana3_0654 0.83 -0.2 774,948 - +1.6 774,948 - -0.3 774,955 - +0.5 774,979 + -0.6 774,982 - -1.5 774,987 - +0.9 775,102 + -0.6 775,207 + -0.2 775,237 - Shewana3_0655 0.13 +0.4 775,239 + Shewana3_0655 0.13 -0.3 775,262 - Shewana3_0655 0.19 +0.4 775,273 - Shewana3_0655 0.22 -0.5 775,386 + Shewana3_0655 0.52 -0.5 775,537 + -0.3 775,537 + -0.8 775,758 - Shewana3_0656 0.17 +0.2
Or see this region's nucleotide sequence