Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0620 and Shewana3_0621 are separated by 205 nucleotides Shewana3_0621 and Shewana3_0622 are separated by 171 nucleotides
Shewana3_0620: Shewana3_0620 - diguanylate cyclase/phosphodiesterase (RefSeq), at 724,932 to 727,118
_0620
Shewana3_0621: Shewana3_0621 - hypothetical protein (RefSeq), at 727,324 to 727,881
_0621
Shewana3_0622: Shewana3_0622 - ATP-dependent helicase HrpB (RefSeq), at 728,053 to 730,560
_0622
Position (kb) 727
728 Strain fitness (log2 ratio) -2
-1
0
1 at 726.468 kb on + strand, within Shewana3_0620 at 726.530 kb on - strand, within Shewana3_0620 at 726.547 kb on + strand, within Shewana3_0620 at 726.547 kb on + strand, within Shewana3_0620 at 726.672 kb on + strand, within Shewana3_0620 at 726.721 kb on - strand, within Shewana3_0620 at 726.929 kb on - strand at 726.967 kb on + strand at 727.071 kb on - strand at 727.087 kb on - strand at 727.088 kb on - strand at 727.088 kb on - strand at 727.095 kb on - strand at 727.410 kb on - strand, within Shewana3_0621 at 727.504 kb on - strand, within Shewana3_0621 at 727.627 kb on + strand, within Shewana3_0621 at 727.637 kb on - strand, within Shewana3_0621 at 727.659 kb on - strand, within Shewana3_0621 at 727.814 kb on - strand, within Shewana3_0621 at 727.864 kb on - strand at 727.999 kb on + strand at 727.999 kb on + strand at 728.007 kb on - strand at 728.166 kb on - strand at 728.171 kb on - strand at 728.300 kb on - strand at 728.327 kb on - strand, within Shewana3_0622 at 728.434 kb on - strand, within Shewana3_0622 at 728.437 kb on + strand, within Shewana3_0622 at 728.476 kb on + strand, within Shewana3_0622 at 728.577 kb on + strand, within Shewana3_0622 at 728.579 kb on - strand, within Shewana3_0622 at 728.634 kb on + strand, within Shewana3_0622 at 728.754 kb on + strand, within Shewana3_0622 at 728.756 kb on + strand, within Shewana3_0622 at 728.756 kb on + strand, within Shewana3_0622 at 728.824 kb on + strand, within Shewana3_0622 at 728.824 kb on + strand, within Shewana3_0622 at 728.829 kb on + strand, within Shewana3_0622 at 728.837 kb on - strand, within Shewana3_0622 at 728.837 kb on - strand, within Shewana3_0622
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 726,468 + Shewana3_0620 0.70 -0.3 726,530 - Shewana3_0620 0.73 -0.3 726,547 + Shewana3_0620 0.74 +0.2 726,547 + Shewana3_0620 0.74 -0.7 726,672 + Shewana3_0620 0.80 +0.0 726,721 - Shewana3_0620 0.82 -1.1 726,929 - +0.3 726,967 + +1.0 727,071 - +0.9 727,087 - -1.0 727,088 - +0.3 727,088 - -0.0 727,095 - -0.2 727,410 - Shewana3_0621 0.15 -0.2 727,504 - Shewana3_0621 0.32 +1.3 727,627 + Shewana3_0621 0.54 -0.0 727,637 - Shewana3_0621 0.56 -0.4 727,659 - Shewana3_0621 0.60 -1.5 727,814 - Shewana3_0621 0.88 -1.3 727,864 - -1.0 727,999 + -1.0 727,999 + +0.3 728,007 - -0.1 728,166 - -0.2 728,171 - +0.8 728,300 - +0.3 728,327 - Shewana3_0622 0.11 +0.3 728,434 - Shewana3_0622 0.15 -1.2 728,437 + Shewana3_0622 0.15 -0.2 728,476 + Shewana3_0622 0.17 +0.1 728,577 + Shewana3_0622 0.21 +0.0 728,579 - Shewana3_0622 0.21 -0.5 728,634 + Shewana3_0622 0.23 -0.2 728,754 + Shewana3_0622 0.28 +0.4 728,756 + Shewana3_0622 0.28 -0.9 728,756 + Shewana3_0622 0.28 -0.0 728,824 + Shewana3_0622 0.31 +0.1 728,824 + Shewana3_0622 0.31 -0.5 728,829 + Shewana3_0622 0.31 -2.3 728,837 - Shewana3_0622 0.31 -0.2 728,837 - Shewana3_0622 0.31 +0.0
Or see this region's nucleotide sequence