Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0601

Experiment: Paraquat dichloride 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0600 and Shewana3_0601 are separated by 368 nucleotidesShewana3_0601 and Shewana3_0602 overlap by 1 nucleotides Shewana3_0600: Shewana3_0600 - HflC protein (RefSeq), at 703,661 to 704,554 _0600 Shewana3_0601: Shewana3_0601 - ubiquinol-cytochrome c reductase, iron-sulfur subunit (RefSeq), at 704,923 to 705,513 _0601 Shewana3_0602: Shewana3_0602 - cytochrome b/b6 domain-containing protein (RefSeq), at 705,513 to 706,727 _0602 Position (kb) 704 705 706Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8 9 10at 704.209 kb on + strand, within Shewana3_0600at 704.263 kb on + strand, within Shewana3_0600at 704.481 kb on + strandat 704.829 kb on - strandat 705.718 kb on + strand, within Shewana3_0602at 705.723 kb on + strand, within Shewana3_0602at 706.009 kb on + strand, within Shewana3_0602at 706.099 kb on - strand, within Shewana3_0602at 706.396 kb on - strand, within Shewana3_0602at 706.489 kb on + strand, within Shewana3_0602

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml
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704,209 + Shewana3_0600 0.61 -2.9
704,263 + Shewana3_0600 0.67 -0.1
704,481 + -3.1
704,829 - +10.5
705,718 + Shewana3_0602 0.17 +9.9
705,723 + Shewana3_0602 0.17 +4.3
706,009 + Shewana3_0602 0.41 +8.3
706,099 - Shewana3_0602 0.48 +7.3
706,396 - Shewana3_0602 0.73 +3.6
706,489 + Shewana3_0602 0.80 +3.7

Or see this region's nucleotide sequence