Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0586

Experiment: Paraquat dichloride 0.008 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_0584 and Shewana3_0585 are separated by 23 nucleotidesShewana3_0585 and Shewana3_0586 are separated by 15 nucleotidesShewana3_0586 and Shewana3_0587 are separated by 68 nucleotidesShewana3_0587 and Shewana3_0588 are separated by 14 nucleotides Shewana3_0584: Shewana3_0584 - hypothetical protein (RefSeq), at 684,630 to 684,965 _0584 Shewana3_0585: Shewana3_0585 - glycerophosphoryl diester phosphodiesterase (RefSeq), at 684,989 to 685,711 _0585 Shewana3_0586: Shewana3_0586 - MscS mechanosensitive ion channel (RefSeq), at 685,727 to 688,930 _0586 Shewana3_0587: Shewana3_0587 - hypothetical protein (RefSeq), at 688,999 to 689,883 _0587 Shewana3_0588: Shewana3_0588 - phosphatidylserine decarboxylase (RefSeq), at 689,898 to 690,776 _0588 Position (kb) 685 686 687 688 689Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 684.772 kb on - strand, within Shewana3_0584at 684.772 kb on - strand, within Shewana3_0584at 684.789 kb on - strand, within Shewana3_0584at 684.813 kb on + strand, within Shewana3_0584at 684.968 kb on - strandat 685.085 kb on - strand, within Shewana3_0585at 685.087 kb on + strand, within Shewana3_0585at 685.093 kb on - strand, within Shewana3_0585at 685.130 kb on - strand, within Shewana3_0585at 685.143 kb on + strand, within Shewana3_0585at 685.201 kb on + strand, within Shewana3_0585at 685.401 kb on - strand, within Shewana3_0585at 685.606 kb on - strand, within Shewana3_0585at 685.628 kb on + strand, within Shewana3_0585at 685.649 kb on - strandat 685.879 kb on + strandat 685.889 kb on + strandat 685.950 kb on + strandat 685.983 kb on + strandat 686.167 kb on - strand, within Shewana3_0586at 686.323 kb on + strand, within Shewana3_0586at 686.375 kb on - strand, within Shewana3_0586at 686.430 kb on - strand, within Shewana3_0586at 686.564 kb on - strand, within Shewana3_0586at 686.793 kb on - strand, within Shewana3_0586at 686.908 kb on - strand, within Shewana3_0586at 686.949 kb on + strand, within Shewana3_0586at 686.951 kb on + strand, within Shewana3_0586at 686.962 kb on + strand, within Shewana3_0586at 686.965 kb on - strand, within Shewana3_0586at 686.970 kb on - strand, within Shewana3_0586at 686.977 kb on - strand, within Shewana3_0586at 687.092 kb on + strand, within Shewana3_0586at 687.100 kb on - strand, within Shewana3_0586at 687.156 kb on - strand, within Shewana3_0586at 687.232 kb on - strand, within Shewana3_0586at 687.270 kb on + strand, within Shewana3_0586at 687.435 kb on - strand, within Shewana3_0586at 687.435 kb on - strand, within Shewana3_0586at 687.441 kb on - strand, within Shewana3_0586at 687.441 kb on - strand, within Shewana3_0586at 687.462 kb on - strand, within Shewana3_0586at 687.500 kb on + strand, within Shewana3_0586at 687.553 kb on + strand, within Shewana3_0586at 687.566 kb on - strand, within Shewana3_0586at 687.722 kb on - strand, within Shewana3_0586at 687.749 kb on + strand, within Shewana3_0586at 687.757 kb on - strand, within Shewana3_0586at 687.758 kb on + strand, within Shewana3_0586at 687.850 kb on + strand, within Shewana3_0586at 687.858 kb on - strand, within Shewana3_0586at 687.906 kb on - strand, within Shewana3_0586at 687.906 kb on - strand, within Shewana3_0586at 687.944 kb on - strand, within Shewana3_0586at 687.948 kb on - strand, within Shewana3_0586at 688.327 kb on - strand, within Shewana3_0586at 688.749 kb on - strandat 689.200 kb on + strand, within Shewana3_0587at 689.200 kb on + strand, within Shewana3_0587at 689.252 kb on - strand, within Shewana3_0587at 689.431 kb on + strand, within Shewana3_0587at 689.439 kb on - strand, within Shewana3_0587at 689.462 kb on - strand, within Shewana3_0587at 689.462 kb on - strand, within Shewana3_0587at 689.640 kb on + strand, within Shewana3_0587at 689.640 kb on + strand, within Shewana3_0587at 689.658 kb on + strand, within Shewana3_0587at 689.740 kb on + strand, within Shewana3_0587at 689.748 kb on - strand, within Shewana3_0587at 689.784 kb on + strand, within Shewana3_0587at 689.837 kb on + strandat 689.865 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml
remove
684,772 - Shewana3_0584 0.42 -1.1
684,772 - Shewana3_0584 0.42 +2.6
684,789 - Shewana3_0584 0.47 +0.0
684,813 + Shewana3_0584 0.54 +0.9
684,968 - -0.2
685,085 - Shewana3_0585 0.13 -0.4
685,087 + Shewana3_0585 0.14 -0.5
685,093 - Shewana3_0585 0.14 -0.3
685,130 - Shewana3_0585 0.20 +0.2
685,143 + Shewana3_0585 0.21 -0.8
685,201 + Shewana3_0585 0.29 -0.8
685,401 - Shewana3_0585 0.57 -0.1
685,606 - Shewana3_0585 0.85 -1.6
685,628 + Shewana3_0585 0.88 -0.1
685,649 - +0.8
685,879 + -0.7
685,889 + -0.6
685,950 + +1.6
685,983 + -0.2
686,167 - Shewana3_0586 0.14 -0.5
686,323 + Shewana3_0586 0.19 -0.9
686,375 - Shewana3_0586 0.20 +0.6
686,430 - Shewana3_0586 0.22 +0.2
686,564 - Shewana3_0586 0.26 -0.3
686,793 - Shewana3_0586 0.33 +0.0
686,908 - Shewana3_0586 0.37 -0.9
686,949 + Shewana3_0586 0.38 -0.2
686,951 + Shewana3_0586 0.38 +0.6
686,962 + Shewana3_0586 0.39 +5.7
686,965 - Shewana3_0586 0.39 -0.5
686,970 - Shewana3_0586 0.39 -2.0
686,977 - Shewana3_0586 0.39 -2.0
687,092 + Shewana3_0586 0.43 -1.2
687,100 - Shewana3_0586 0.43 -0.5
687,156 - Shewana3_0586 0.45 +0.0
687,232 - Shewana3_0586 0.47 -1.0
687,270 + Shewana3_0586 0.48 -1.4
687,435 - Shewana3_0586 0.53 -0.3
687,435 - Shewana3_0586 0.53 -0.2
687,441 - Shewana3_0586 0.53 -2.7
687,441 - Shewana3_0586 0.53 -1.4
687,462 - Shewana3_0586 0.54 -0.7
687,500 + Shewana3_0586 0.55 +5.3
687,553 + Shewana3_0586 0.57 +1.3
687,566 - Shewana3_0586 0.57 +0.4
687,722 - Shewana3_0586 0.62 -0.5
687,749 + Shewana3_0586 0.63 -0.3
687,757 - Shewana3_0586 0.63 -1.2
687,758 + Shewana3_0586 0.63 +0.6
687,850 + Shewana3_0586 0.66 -0.2
687,858 - Shewana3_0586 0.67 -0.1
687,906 - Shewana3_0586 0.68 -1.7
687,906 - Shewana3_0586 0.68 -0.1
687,944 - Shewana3_0586 0.69 -0.4
687,948 - Shewana3_0586 0.69 -1.2
688,327 - Shewana3_0586 0.81 -0.2
688,749 - +3.6
689,200 + Shewana3_0587 0.23 -0.2
689,200 + Shewana3_0587 0.23 -0.4
689,252 - Shewana3_0587 0.29 -1.1
689,431 + Shewana3_0587 0.49 -1.5
689,439 - Shewana3_0587 0.50 +0.8
689,462 - Shewana3_0587 0.52 +0.3
689,462 - Shewana3_0587 0.52 -1.4
689,640 + Shewana3_0587 0.72 +0.5
689,640 + Shewana3_0587 0.72 -0.1
689,658 + Shewana3_0587 0.74 +0.0
689,740 + Shewana3_0587 0.84 -0.6
689,748 - Shewana3_0587 0.85 +1.9
689,784 + Shewana3_0587 0.89 +0.2
689,837 + -2.5
689,865 + +6.5

Or see this region's nucleotide sequence