Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0565 and Shewana3_0566 overlap by 17 nucleotides Shewana3_0566 and Shewana3_0567 are separated by 4 nucleotides Shewana3_0567 and Shewana3_0568 are separated by 156 nucleotides
Shewana3_0565: Shewana3_0565 - hypothetical protein (RefSeq), at 658,020 to 659,201
_0565
Shewana3_0566: Shewana3_0566 - periplasmic solute binding protein (RefSeq), at 659,185 to 660,093
_0566
Shewana3_0567: Shewana3_0567 - ABC-3 protein (RefSeq), at 660,098 to 660,865
_0567
Shewana3_0568: Shewana3_0568 - 1-acyl-sn-glycerol-3-phosphate acyltransferase (RefSeq), at 661,022 to 661,804
_0568
Position (kb) 659
660
661 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7 at 658.265 kb on + strand, within Shewana3_0565 at 658.426 kb on - strand, within Shewana3_0565 at 658.499 kb on + strand, within Shewana3_0565 at 658.499 kb on + strand, within Shewana3_0565 at 658.531 kb on - strand, within Shewana3_0565 at 658.531 kb on - strand, within Shewana3_0565 at 658.571 kb on + strand, within Shewana3_0565 at 658.631 kb on - strand, within Shewana3_0565 at 658.772 kb on - strand, within Shewana3_0565 at 658.831 kb on + strand, within Shewana3_0565 at 658.850 kb on + strand, within Shewana3_0565 at 658.850 kb on + strand, within Shewana3_0565 at 658.858 kb on - strand, within Shewana3_0565 at 658.858 kb on - strand, within Shewana3_0565 at 658.939 kb on + strand, within Shewana3_0565 at 659.004 kb on - strand, within Shewana3_0565 at 659.011 kb on - strand, within Shewana3_0565 at 659.041 kb on + strand, within Shewana3_0565 at 659.162 kb on + strand at 659.162 kb on - strand at 659.562 kb on - strand, within Shewana3_0566 at 659.656 kb on - strand, within Shewana3_0566 at 659.656 kb on - strand, within Shewana3_0566 at 659.762 kb on - strand, within Shewana3_0566 at 660.052 kb on + strand at 660.052 kb on + strand at 660.052 kb on + strand at 660.060 kb on - strand at 660.235 kb on - strand, within Shewana3_0567 at 660.266 kb on + strand, within Shewana3_0567 at 660.281 kb on - strand, within Shewana3_0567 at 660.450 kb on + strand, within Shewana3_0567 at 660.695 kb on + strand, within Shewana3_0567 at 660.729 kb on + strand, within Shewana3_0567 at 660.775 kb on - strand, within Shewana3_0567 at 660.805 kb on - strand at 660.929 kb on + strand at 661.077 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 658,265 + Shewana3_0565 0.21 -0.0 658,426 - Shewana3_0565 0.34 -0.9 658,499 + Shewana3_0565 0.41 -1.1 658,499 + Shewana3_0565 0.41 -1.3 658,531 - Shewana3_0565 0.43 +0.1 658,531 - Shewana3_0565 0.43 -0.2 658,571 + Shewana3_0565 0.47 -0.2 658,631 - Shewana3_0565 0.52 +1.8 658,772 - Shewana3_0565 0.64 +6.8 658,831 + Shewana3_0565 0.69 -1.2 658,850 + Shewana3_0565 0.70 -0.6 658,850 + Shewana3_0565 0.70 +1.7 658,858 - Shewana3_0565 0.71 +0.3 658,858 - Shewana3_0565 0.71 +0.1 658,939 + Shewana3_0565 0.78 -0.6 659,004 - Shewana3_0565 0.83 -0.9 659,011 - Shewana3_0565 0.84 +0.1 659,041 + Shewana3_0565 0.86 +0.8 659,162 + -0.2 659,162 - +0.6 659,562 - Shewana3_0566 0.41 -1.7 659,656 - Shewana3_0566 0.52 +0.8 659,656 - Shewana3_0566 0.52 -1.3 659,762 - Shewana3_0566 0.63 -0.2 660,052 + -0.3 660,052 + -0.8 660,052 + -0.5 660,060 - -0.9 660,235 - Shewana3_0567 0.18 -0.4 660,266 + Shewana3_0567 0.22 +0.6 660,281 - Shewana3_0567 0.24 +1.6 660,450 + Shewana3_0567 0.46 -0.5 660,695 + Shewana3_0567 0.78 -0.4 660,729 + Shewana3_0567 0.82 +1.5 660,775 - Shewana3_0567 0.88 -3.1 660,805 - +0.1 660,929 + -0.1 661,077 + -1.0
Or see this region's nucleotide sequence