Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0562 and Shewana3_0563 are separated by 80 nucleotides Shewana3_0563 and Shewana3_0564 are separated by 255 nucleotides Shewana3_0564 and Shewana3_0565 are separated by 81 nucleotides Shewana3_0565 and Shewana3_0566 overlap by 17 nucleotides Shewana3_0566 and Shewana3_0567 are separated by 4 nucleotides
Shewana3_0562: Shewana3_0562 - hypothetical protein (RefSeq), at 656,857 to 657,186
_0562
Shewana3_0563: Shewana3_0563 - hypothetical protein (RefSeq), at 657,267 to 657,392
_0563
Shewana3_0564: Shewana3_0564 - hypothetical protein (RefSeq), at 657,648 to 657,938
_0564
Shewana3_0565: Shewana3_0565 - hypothetical protein (RefSeq), at 658,020 to 659,201
_0565
Shewana3_0566: Shewana3_0566 - periplasmic solute binding protein (RefSeq), at 659,185 to 660,093
_0566
Shewana3_0567: Shewana3_0567 - ABC-3 protein (RefSeq), at 660,098 to 660,865
_0567
Position (kb) 658
659
660 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7 at 657.033 kb on - strand, within Shewana3_0562 at 657.227 kb on - strand at 657.254 kb on + strand at 657.254 kb on + strand at 657.262 kb on - strand at 657.262 kb on - strand at 657.398 kb on - strand at 657.418 kb on - strand at 657.437 kb on + strand at 657.437 kb on + strand at 657.437 kb on + strand at 657.445 kb on - strand at 657.445 kb on - strand at 657.445 kb on - strand at 657.447 kb on + strand at 657.615 kb on - strand at 657.642 kb on + strand at 657.777 kb on - strand, within Shewana3_0564 at 657.896 kb on + strand, within Shewana3_0564 at 657.896 kb on + strand, within Shewana3_0564 at 657.904 kb on - strand, within Shewana3_0564 at 657.909 kb on - strand, within Shewana3_0564 at 658.123 kb on + strand at 658.136 kb on - strand at 658.183 kb on + strand, within Shewana3_0565 at 658.265 kb on + strand, within Shewana3_0565 at 658.426 kb on - strand, within Shewana3_0565 at 658.499 kb on + strand, within Shewana3_0565 at 658.499 kb on + strand, within Shewana3_0565 at 658.531 kb on - strand, within Shewana3_0565 at 658.531 kb on - strand, within Shewana3_0565 at 658.571 kb on + strand, within Shewana3_0565 at 658.631 kb on - strand, within Shewana3_0565 at 658.772 kb on - strand, within Shewana3_0565 at 658.831 kb on + strand, within Shewana3_0565 at 658.850 kb on + strand, within Shewana3_0565 at 658.850 kb on + strand, within Shewana3_0565 at 658.858 kb on - strand, within Shewana3_0565 at 658.858 kb on - strand, within Shewana3_0565 at 658.939 kb on + strand, within Shewana3_0565 at 659.004 kb on - strand, within Shewana3_0565 at 659.011 kb on - strand, within Shewana3_0565 at 659.041 kb on + strand, within Shewana3_0565 at 659.162 kb on + strand at 659.162 kb on - strand at 659.562 kb on - strand, within Shewana3_0566 at 659.656 kb on - strand, within Shewana3_0566 at 659.656 kb on - strand, within Shewana3_0566 at 659.762 kb on - strand, within Shewana3_0566 at 660.052 kb on + strand at 660.052 kb on + strand at 660.052 kb on + strand at 660.060 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 657,033 - Shewana3_0562 0.53 +0.6 657,227 - +1.1 657,254 + +0.1 657,254 + -1.1 657,262 - +0.1 657,262 - -0.1 657,398 - +0.4 657,418 - +0.8 657,437 + -0.7 657,437 + -1.9 657,437 + -1.6 657,445 - +2.6 657,445 - -1.5 657,445 - +2.0 657,447 + +0.5 657,615 - +0.3 657,642 + +0.4 657,777 - Shewana3_0564 0.44 +0.7 657,896 + Shewana3_0564 0.85 -0.4 657,896 + Shewana3_0564 0.85 +0.2 657,904 - Shewana3_0564 0.88 +0.1 657,909 - Shewana3_0564 0.90 +0.2 658,123 + -0.4 658,136 - +0.1 658,183 + Shewana3_0565 0.14 -0.2 658,265 + Shewana3_0565 0.21 -0.0 658,426 - Shewana3_0565 0.34 -0.9 658,499 + Shewana3_0565 0.41 -1.1 658,499 + Shewana3_0565 0.41 -1.3 658,531 - Shewana3_0565 0.43 +0.1 658,531 - Shewana3_0565 0.43 -0.2 658,571 + Shewana3_0565 0.47 -0.2 658,631 - Shewana3_0565 0.52 +1.8 658,772 - Shewana3_0565 0.64 +6.8 658,831 + Shewana3_0565 0.69 -1.2 658,850 + Shewana3_0565 0.70 -0.6 658,850 + Shewana3_0565 0.70 +1.7 658,858 - Shewana3_0565 0.71 +0.3 658,858 - Shewana3_0565 0.71 +0.1 658,939 + Shewana3_0565 0.78 -0.6 659,004 - Shewana3_0565 0.83 -0.9 659,011 - Shewana3_0565 0.84 +0.1 659,041 + Shewana3_0565 0.86 +0.8 659,162 + -0.2 659,162 - +0.6 659,562 - Shewana3_0566 0.41 -1.7 659,656 - Shewana3_0566 0.52 +0.8 659,656 - Shewana3_0566 0.52 -1.3 659,762 - Shewana3_0566 0.63 -0.2 660,052 + -0.3 660,052 + -0.8 660,052 + -0.5 660,060 - -0.9
Or see this region's nucleotide sequence