Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0549 and Shewana3_0550 are separated by 43 nucleotides Shewana3_0550 and Shewana3_0551 are separated by 6 nucleotides Shewana3_0551 and Shewana3_0552 are separated by 149 nucleotides Shewana3_0552 and Shewana3_0553 are separated by 272 nucleotides
Shewana3_0549: Shewana3_0549 - hypothetical protein (RefSeq), at 644,091 to 644,555
_0549
Shewana3_0550: Shewana3_0550 - hypothetical protein (RefSeq), at 644,599 to 645,108
_0550
Shewana3_0551: Shewana3_0551 - hypothetical protein (RefSeq), at 645,115 to 645,429
_0551
Shewana3_0552: Shewana3_0552 - hypothetical protein (RefSeq), at 645,579 to 645,887
_0552
Shewana3_0553: Shewana3_0553 - hypothetical protein (RefSeq), at 646,160 to 646,684
_0553
Position (kb) 645
646 Strain fitness (log2 ratio) -2
-1
0
1
2 at 644.125 kb on - strand at 644.143 kb on + strand, within Shewana3_0549 at 644.201 kb on - strand, within Shewana3_0549 at 644.202 kb on + strand, within Shewana3_0549 at 644.231 kb on - strand, within Shewana3_0549 at 644.290 kb on - strand, within Shewana3_0549 at 644.321 kb on + strand, within Shewana3_0549 at 644.407 kb on + strand, within Shewana3_0549 at 644.843 kb on + strand, within Shewana3_0550 at 644.898 kb on + strand, within Shewana3_0550 at 644.924 kb on + strand, within Shewana3_0550 at 645.151 kb on + strand, within Shewana3_0551 at 645.172 kb on + strand, within Shewana3_0551 at 645.239 kb on + strand, within Shewana3_0551 at 645.239 kb on + strand, within Shewana3_0551 at 645.314 kb on + strand, within Shewana3_0551 at 645.314 kb on + strand, within Shewana3_0551 at 645.322 kb on - strand, within Shewana3_0551 at 645.362 kb on - strand, within Shewana3_0551 at 645.362 kb on - strand, within Shewana3_0551 at 645.707 kb on + strand, within Shewana3_0552 at 645.707 kb on + strand, within Shewana3_0552 at 645.715 kb on - strand, within Shewana3_0552 at 646.198 kb on - strand at 646.203 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 644,125 - -1.4 644,143 + Shewana3_0549 0.11 -0.3 644,201 - Shewana3_0549 0.24 -0.6 644,202 + Shewana3_0549 0.24 -0.4 644,231 - Shewana3_0549 0.30 +0.6 644,290 - Shewana3_0549 0.43 +0.3 644,321 + Shewana3_0549 0.49 -1.1 644,407 + Shewana3_0549 0.68 +0.1 644,843 + Shewana3_0550 0.48 -0.2 644,898 + Shewana3_0550 0.59 -0.2 644,924 + Shewana3_0550 0.64 +0.0 645,151 + Shewana3_0551 0.11 +0.8 645,172 + Shewana3_0551 0.18 -0.5 645,239 + Shewana3_0551 0.39 +0.6 645,239 + Shewana3_0551 0.39 -0.9 645,314 + Shewana3_0551 0.63 -2.7 645,314 + Shewana3_0551 0.63 -0.3 645,322 - Shewana3_0551 0.66 +2.7 645,362 - Shewana3_0551 0.78 +0.5 645,362 - Shewana3_0551 0.78 -1.1 645,707 + Shewana3_0552 0.41 -1.4 645,707 + Shewana3_0552 0.41 +0.4 645,715 - Shewana3_0552 0.44 -1.4 646,198 - +1.0 646,203 + -0.6
Or see this region's nucleotide sequence