Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0546 and Shewana3_0547 are separated by 289 nucleotides Shewana3_0547 and Shewana3_0548 are separated by 146 nucleotides Shewana3_0548 and Shewana3_0549 are separated by 74 nucleotides Shewana3_0549 and Shewana3_0550 are separated by 43 nucleotides
Shewana3_0546: Shewana3_0546 - hypothetical protein (RefSeq), at 641,818 to 642,510
_0546
Shewana3_0547: Shewana3_0547 - histone family protein DNA-binding protein (RefSeq), at 642,800 to 643,072
_0547
Shewana3_0548: Shewana3_0548 - no description, at 643,219 to 644,016
_0548
Shewana3_0549: Shewana3_0549 - hypothetical protein (RefSeq), at 644,091 to 644,555
_0549
Shewana3_0550: Shewana3_0550 - hypothetical protein (RefSeq), at 644,599 to 645,108
_0550
Position (kb) 643
644
645 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 642.258 kb on - strand, within Shewana3_0546 at 642.260 kb on + strand, within Shewana3_0546 at 642.260 kb on + strand, within Shewana3_0546 at 642.266 kb on + strand, within Shewana3_0546 at 642.358 kb on + strand, within Shewana3_0546 at 642.522 kb on + strand at 642.564 kb on + strand at 642.831 kb on + strand, within Shewana3_0547 at 642.859 kb on - strand, within Shewana3_0547 at 643.065 kb on - strand at 643.124 kb on + strand at 643.280 kb on - strand at 643.280 kb on - strand at 643.300 kb on - strand, within Shewana3_0548 at 643.388 kb on + strand, within Shewana3_0548 at 643.406 kb on - strand, within Shewana3_0548 at 643.602 kb on + strand, within Shewana3_0548 at 643.602 kb on + strand, within Shewana3_0548 at 643.709 kb on - strand, within Shewana3_0548 at 643.944 kb on - strand at 644.047 kb on + strand at 644.079 kb on - strand at 644.125 kb on - strand at 644.143 kb on + strand, within Shewana3_0549 at 644.201 kb on - strand, within Shewana3_0549 at 644.202 kb on + strand, within Shewana3_0549 at 644.231 kb on - strand, within Shewana3_0549 at 644.290 kb on - strand, within Shewana3_0549 at 644.321 kb on + strand, within Shewana3_0549 at 644.407 kb on + strand, within Shewana3_0549 at 644.843 kb on + strand, within Shewana3_0550 at 644.898 kb on + strand, within Shewana3_0550 at 644.924 kb on + strand, within Shewana3_0550
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 642,258 - Shewana3_0546 0.63 -1.2 642,260 + Shewana3_0546 0.64 -1.2 642,260 + Shewana3_0546 0.64 +1.1 642,266 + Shewana3_0546 0.65 -0.0 642,358 + Shewana3_0546 0.78 +0.9 642,522 + +0.2 642,564 + -1.2 642,831 + Shewana3_0547 0.11 +0.2 642,859 - Shewana3_0547 0.22 +5.3 643,065 - -0.6 643,124 + -0.4 643,280 - -0.1 643,280 - +0.0 643,300 - Shewana3_0548 0.10 -0.6 643,388 + Shewana3_0548 0.21 +0.3 643,406 - Shewana3_0548 0.23 -0.8 643,602 + Shewana3_0548 0.48 -0.6 643,602 + Shewana3_0548 0.48 -0.6 643,709 - Shewana3_0548 0.61 +0.1 643,944 - -0.1 644,047 + +0.8 644,079 - -2.3 644,125 - -1.4 644,143 + Shewana3_0549 0.11 -0.3 644,201 - Shewana3_0549 0.24 -0.6 644,202 + Shewana3_0549 0.24 -0.4 644,231 - Shewana3_0549 0.30 +0.6 644,290 - Shewana3_0549 0.43 +0.3 644,321 + Shewana3_0549 0.49 -1.1 644,407 + Shewana3_0549 0.68 +0.1 644,843 + Shewana3_0550 0.48 -0.2 644,898 + Shewana3_0550 0.59 -0.2 644,924 + Shewana3_0550 0.64 +0.0
Or see this region's nucleotide sequence