Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0500 and Shewana3_0501 are separated by 41 nucleotides Shewana3_0501 and Shewana3_0502 are separated by 260 nucleotides
Shewana3_0500: Shewana3_0500 - peptidase M13 (RefSeq), at 583,428 to 585,560
_0500
Shewana3_0501: Shewana3_0501 - fatty acid cistrans isomerase (RefSeq), at 585,602 to 587,995
_0501
Shewana3_0502: Shewana3_0502 - peptidase S8 and S53, subtilisin, kexin, sedolisin (RefSeq), at 588,256 to 593,202
_0502
Position (kb) 585
586
587
588 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 584.607 kb on + strand, within Shewana3_0500 at 584.665 kb on + strand, within Shewana3_0500 at 584.729 kb on + strand, within Shewana3_0500 at 584.737 kb on - strand, within Shewana3_0500 at 584.786 kb on - strand, within Shewana3_0500 at 584.916 kb on + strand, within Shewana3_0500 at 584.924 kb on + strand, within Shewana3_0500 at 585.173 kb on + strand, within Shewana3_0500 at 585.390 kb on + strand at 585.447 kb on + strand at 585.447 kb on + strand at 585.455 kb on - strand at 585.529 kb on - strand at 585.532 kb on - strand at 585.698 kb on - strand at 585.765 kb on + strand at 585.773 kb on - strand at 585.794 kb on + strand at 585.820 kb on - strand at 585.934 kb on - strand, within Shewana3_0501 at 586.017 kb on + strand, within Shewana3_0501 at 586.148 kb on - strand, within Shewana3_0501 at 586.148 kb on - strand, within Shewana3_0501 at 586.163 kb on - strand, within Shewana3_0501 at 586.178 kb on - strand, within Shewana3_0501 at 586.227 kb on - strand, within Shewana3_0501 at 586.366 kb on + strand, within Shewana3_0501 at 586.528 kb on + strand, within Shewana3_0501 at 586.528 kb on + strand, within Shewana3_0501 at 586.661 kb on - strand, within Shewana3_0501 at 586.729 kb on + strand, within Shewana3_0501 at 586.737 kb on - strand, within Shewana3_0501 at 586.771 kb on + strand, within Shewana3_0501 at 586.824 kb on - strand, within Shewana3_0501 at 586.851 kb on - strand, within Shewana3_0501 at 586.884 kb on - strand, within Shewana3_0501 at 586.991 kb on - strand, within Shewana3_0501 at 587.239 kb on - strand, within Shewana3_0501 at 587.335 kb on + strand, within Shewana3_0501 at 587.335 kb on + strand, within Shewana3_0501 at 587.343 kb on - strand, within Shewana3_0501 at 587.524 kb on + strand, within Shewana3_0501 at 587.570 kb on - strand, within Shewana3_0501 at 587.942 kb on - strand at 587.956 kb on - strand at 588.004 kb on - strand at 588.316 kb on - strand at 588.344 kb on - strand at 588.412 kb on - strand at 588.436 kb on - strand at 588.443 kb on - strand at 588.477 kb on - strand at 588.543 kb on + strand at 588.719 kb on - strand at 588.877 kb on - strand, within Shewana3_0502 at 588.921 kb on - strand, within Shewana3_0502 at 588.961 kb on + strand, within Shewana3_0502 at 588.968 kb on - strand, within Shewana3_0502 at 588.969 kb on - strand, within Shewana3_0502
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 584,607 + Shewana3_0500 0.55 -0.0 584,665 + Shewana3_0500 0.58 +0.1 584,729 + Shewana3_0500 0.61 -0.2 584,737 - Shewana3_0500 0.61 +0.3 584,786 - Shewana3_0500 0.64 +0.4 584,916 + Shewana3_0500 0.70 -0.0 584,924 + Shewana3_0500 0.70 +1.1 585,173 + Shewana3_0500 0.82 -0.3 585,390 + -0.3 585,447 + -0.1 585,447 + +0.9 585,455 - +0.3 585,529 - +0.2 585,532 - -0.4 585,698 - -0.4 585,765 + -0.0 585,773 - +0.4 585,794 + +1.4 585,820 - +0.1 585,934 - Shewana3_0501 0.14 +0.2 586,017 + Shewana3_0501 0.17 -0.4 586,148 - Shewana3_0501 0.23 -2.6 586,148 - Shewana3_0501 0.23 -1.1 586,163 - Shewana3_0501 0.23 -0.7 586,178 - Shewana3_0501 0.24 -0.1 586,227 - Shewana3_0501 0.26 +0.2 586,366 + Shewana3_0501 0.32 -0.1 586,528 + Shewana3_0501 0.39 -0.2 586,528 + Shewana3_0501 0.39 +0.0 586,661 - Shewana3_0501 0.44 -0.7 586,729 + Shewana3_0501 0.47 +0.1 586,737 - Shewana3_0501 0.47 +0.2 586,771 + Shewana3_0501 0.49 -1.4 586,824 - Shewana3_0501 0.51 +0.5 586,851 - Shewana3_0501 0.52 -0.4 586,884 - Shewana3_0501 0.54 -0.8 586,991 - Shewana3_0501 0.58 -0.2 587,239 - Shewana3_0501 0.68 -0.0 587,335 + Shewana3_0501 0.72 +0.1 587,335 + Shewana3_0501 0.72 +1.2 587,343 - Shewana3_0501 0.73 -1.3 587,524 + Shewana3_0501 0.80 -0.4 587,570 - Shewana3_0501 0.82 -0.4 587,942 - +5.3 587,956 - -0.2 588,004 - +1.2 588,316 - -0.1 588,344 - -0.6 588,412 - -0.2 588,436 - -2.2 588,443 - +0.9 588,477 - -0.0 588,543 + +0.1 588,719 - +1.0 588,877 - Shewana3_0502 0.13 -1.1 588,921 - Shewana3_0502 0.13 +0.4 588,961 + Shewana3_0502 0.14 -0.3 588,968 - Shewana3_0502 0.14 -0.1 588,969 - Shewana3_0502 0.14 -0.8
Or see this region's nucleotide sequence