Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0495

Experiment: Paraquat dichloride 0.008 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_0494 and Shewana3_0495 are separated by 119 nucleotidesShewana3_0495 and Shewana3_0496 are separated by 9 nucleotides Shewana3_0494: Shewana3_0494 - polysulphide reductase, NrfD (RefSeq), at 576,932 to 577,879 _0494 Shewana3_0495: Shewana3_0495 - no description, at 577,999 to 578,470 _0495 Shewana3_0496: Shewana3_0496 - periplasmic copper-binding (RefSeq), at 578,480 to 579,754 _0496 Position (kb) 577 578 579Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 577.039 kb on - strand, within Shewana3_0494at 577.128 kb on + strand, within Shewana3_0494at 577.393 kb on + strand, within Shewana3_0494at 577.549 kb on - strand, within Shewana3_0494at 577.559 kb on - strand, within Shewana3_0494at 577.884 kb on + strandat 578.142 kb on + strand, within Shewana3_0495at 578.268 kb on + strand, within Shewana3_0495at 578.350 kb on - strand, within Shewana3_0495at 578.366 kb on - strand, within Shewana3_0495at 578.727 kb on + strand, within Shewana3_0496at 578.881 kb on + strand, within Shewana3_0496at 578.889 kb on - strand, within Shewana3_0496at 578.987 kb on + strand, within Shewana3_0496at 579.168 kb on + strand, within Shewana3_0496at 579.302 kb on - strand, within Shewana3_0496at 579.304 kb on + strand, within Shewana3_0496

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml
remove
577,039 - Shewana3_0494 0.11 +1.0
577,128 + Shewana3_0494 0.21 +2.4
577,393 + Shewana3_0494 0.49 +5.0
577,549 - Shewana3_0494 0.65 -1.0
577,559 - Shewana3_0494 0.66 +1.4
577,884 + +0.1
578,142 + Shewana3_0495 0.30 -0.4
578,268 + Shewana3_0495 0.57 -0.6
578,350 - Shewana3_0495 0.74 +0.5
578,366 - Shewana3_0495 0.78 +0.1
578,727 + Shewana3_0496 0.19 +1.9
578,881 + Shewana3_0496 0.31 -0.1
578,889 - Shewana3_0496 0.32 +0.1
578,987 + Shewana3_0496 0.40 -0.8
579,168 + Shewana3_0496 0.54 -0.1
579,302 - Shewana3_0496 0.64 +0.2
579,304 + Shewana3_0496 0.65 -0.1

Or see this region's nucleotide sequence