Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0457 and Shewana3_0458 are separated by 493 nucleotides Shewana3_0458 and Shewana3_0459 are separated by 300 nucleotides Shewana3_0459 and Shewana3_0460 are separated by 193 nucleotides Shewana3_0460 and Shewana3_0461 are separated by 11 nucleotides Shewana3_0461 and Shewana3_0462 are separated by 47 nucleotides
Shewana3_0457: Shewana3_0457 - response regulator receiver protein (RefSeq), at 532,535 to 533,491
_0457
Shewana3_0458: Shewana3_0458 - hypothetical protein (RefSeq), at 533,985 to 534,119
_0458
Shewana3_0459: Shewana3_0459 - protein of unknown function DUF853, NPT hydrolase putative (RefSeq), at 534,420 to 535,913
_0459
Shewana3_0460: Shewana3_0460 - hypothetical protein (RefSeq), at 536,107 to 536,340
_0460
Shewana3_0461: Shewana3_0461 - hypothetical protein (RefSeq), at 536,352 to 536,777
_0461
Shewana3_0462: Shewana3_0462 - protein of unknown function, zinc metallopeptidase putative (RefSeq), at 536,825 to 537,703
_0462
Position (kb)
534
535
536 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 533.431 kb on - strand at 533.446 kb on + strand at 533.455 kb on - strand at 533.524 kb on - strand at 533.664 kb on - strand at 534.175 kb on + strand at 534.287 kb on - strand at 534.320 kb on - strand at 534.404 kb on + strand at 534.412 kb on - strand at 534.412 kb on - strand at 534.412 kb on - strand at 534.416 kb on + strand at 534.490 kb on + strand at 534.525 kb on + strand at 534.573 kb on + strand, within Shewana3_0459 at 534.633 kb on + strand, within Shewana3_0459 at 534.748 kb on - strand, within Shewana3_0459 at 534.967 kb on + strand, within Shewana3_0459 at 534.988 kb on - strand, within Shewana3_0459 at 535.232 kb on + strand, within Shewana3_0459 at 535.443 kb on + strand, within Shewana3_0459 at 535.479 kb on + strand, within Shewana3_0459 at 535.502 kb on + strand, within Shewana3_0459 at 535.746 kb on - strand, within Shewana3_0459 at 535.907 kb on - strand at 535.961 kb on + strand at 535.969 kb on - strand at 535.969 kb on - strand at 536.050 kb on - strand at 536.051 kb on - strand at 536.056 kb on - strand at 536.154 kb on - strand, within Shewana3_0460 at 536.245 kb on + strand, within Shewana3_0460 at 536.253 kb on - strand, within Shewana3_0460 at 536.253 kb on - strand, within Shewana3_0460 at 536.316 kb on - strand, within Shewana3_0460 at 536.351 kb on + strand at 536.375 kb on + strand at 536.414 kb on - strand, within Shewana3_0461 at 536.813 kb on - strand at 536.881 kb on + strand at 536.881 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 533,431 - -2.0 533,446 + +0.5 533,455 - -1.1 533,524 - +1.5 533,664 - -0.3 534,175 + +3.6 534,287 - -0.2 534,320 - -1.1 534,404 + +0.7 534,412 - -0.7 534,412 - -0.4 534,412 - +0.1 534,416 + +0.2 534,490 + +3.5 534,525 + +0.4 534,573 + Shewana3_0459 0.10 +0.8 534,633 + Shewana3_0459 0.14 -0.5 534,748 - Shewana3_0459 0.22 -0.0 534,967 + Shewana3_0459 0.37 +0.3 534,988 - Shewana3_0459 0.38 -0.0 535,232 + Shewana3_0459 0.54 -0.4 535,443 + Shewana3_0459 0.68 -0.7 535,479 + Shewana3_0459 0.71 +2.8 535,502 + Shewana3_0459 0.72 +0.4 535,746 - Shewana3_0459 0.89 +0.6 535,907 - -0.6 535,961 + -0.9 535,969 - -0.3 535,969 - +0.5 536,050 - +1.2 536,051 - -0.5 536,056 - +1.0 536,154 - Shewana3_0460 0.20 -0.1 536,245 + Shewana3_0460 0.59 -0.6 536,253 - Shewana3_0460 0.62 -0.7 536,253 - Shewana3_0460 0.62 +0.2 536,316 - Shewana3_0460 0.89 -0.6 536,351 + +0.2 536,375 + -0.5 536,414 - Shewana3_0461 0.15 -0.1 536,813 - -1.1 536,881 + +0.0 536,881 - +0.0
Or see this region's nucleotide sequence