Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt purH and zntR are separated by 336 nucleotides zntR and Shewana3_0443 are separated by 2 nucleotides Shewana3_0443 and Shewana3_0444 are separated by 107 nucleotides
Shewana3_0441: purH - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (RefSeq), at 515,787 to 517,385
purH
Shewana3_0442: zntR - zinc-responsive transcriptional regulator (RefSeq), at 517,722 to 518,195
zntR
Shewana3_0443: Shewana3_0443 - permease (RefSeq), at 518,198 to 519,691
_0443
Shewana3_0444: Shewana3_0444 - band 7 protein (RefSeq), at 519,799 to 520,686
_0444
Position (kb) 518
519
520 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 517.226 kb on + strand at 517.385 kb on + strand at 517.566 kb on + strand at 517.640 kb on + strand at 517.648 kb on - strand at 517.679 kb on + strand at 517.713 kb on + strand at 517.714 kb on + strand at 517.779 kb on - strand, within zntR at 517.807 kb on - strand, within zntR at 517.835 kb on + strand, within zntR at 517.843 kb on - strand, within zntR at 517.952 kb on + strand, within zntR at 518.115 kb on - strand, within zntR at 518.147 kb on - strand, within zntR at 518.245 kb on + strand at 518.375 kb on - strand, within Shewana3_0443 at 518.411 kb on - strand, within Shewana3_0443 at 518.482 kb on - strand, within Shewana3_0443 at 518.580 kb on + strand, within Shewana3_0443 at 518.669 kb on + strand, within Shewana3_0443 at 518.683 kb on - strand, within Shewana3_0443 at 518.712 kb on + strand, within Shewana3_0443 at 518.862 kb on + strand, within Shewana3_0443 at 518.862 kb on + strand, within Shewana3_0443 at 518.911 kb on + strand, within Shewana3_0443 at 518.934 kb on - strand, within Shewana3_0443 at 518.954 kb on + strand, within Shewana3_0443 at 519.038 kb on - strand, within Shewana3_0443 at 519.088 kb on + strand, within Shewana3_0443 at 519.103 kb on + strand, within Shewana3_0443 at 519.233 kb on - strand, within Shewana3_0443 at 519.241 kb on + strand, within Shewana3_0443 at 519.251 kb on + strand, within Shewana3_0443 at 519.295 kb on + strand, within Shewana3_0443 at 519.305 kb on + strand, within Shewana3_0443 at 519.372 kb on + strand, within Shewana3_0443 at 519.420 kb on + strand, within Shewana3_0443 at 519.445 kb on + strand, within Shewana3_0443 at 519.457 kb on + strand, within Shewana3_0443 at 519.479 kb on + strand, within Shewana3_0443 at 519.479 kb on + strand, within Shewana3_0443 at 519.487 kb on - strand, within Shewana3_0443 at 519.679 kb on + strand at 519.745 kb on + strand at 519.859 kb on - strand at 519.980 kb on + strand, within Shewana3_0444 at 519.980 kb on + strand, within Shewana3_0444 at 520.111 kb on + strand, within Shewana3_0444 at 520.441 kb on + strand, within Shewana3_0444
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 517,226 + -0.4 517,385 + -0.5 517,566 + +1.6 517,640 + -0.4 517,648 - +0.9 517,679 + -0.4 517,713 + +1.1 517,714 + -1.5 517,779 - zntR Shewana3_0442 0.12 +0.3 517,807 - zntR Shewana3_0442 0.18 -0.1 517,835 + zntR Shewana3_0442 0.24 -0.2 517,843 - zntR Shewana3_0442 0.26 +0.3 517,952 + zntR Shewana3_0442 0.49 -0.6 518,115 - zntR Shewana3_0442 0.83 +0.8 518,147 - zntR Shewana3_0442 0.90 -1.3 518,245 + +0.3 518,375 - Shewana3_0443 0.12 -1.0 518,411 - Shewana3_0443 0.14 +0.1 518,482 - Shewana3_0443 0.19 +1.7 518,580 + Shewana3_0443 0.26 -1.7 518,669 + Shewana3_0443 0.32 -1.2 518,683 - Shewana3_0443 0.32 -0.7 518,712 + Shewana3_0443 0.34 -0.6 518,862 + Shewana3_0443 0.44 -0.2 518,862 + Shewana3_0443 0.44 -0.7 518,911 + Shewana3_0443 0.48 +1.1 518,934 - Shewana3_0443 0.49 +2.7 518,954 + Shewana3_0443 0.51 -1.2 519,038 - Shewana3_0443 0.56 +1.3 519,088 + Shewana3_0443 0.60 -0.4 519,103 + Shewana3_0443 0.61 -1.0 519,233 - Shewana3_0443 0.69 +1.1 519,241 + Shewana3_0443 0.70 -2.3 519,251 + Shewana3_0443 0.70 -1.0 519,295 + Shewana3_0443 0.73 -2.5 519,305 + Shewana3_0443 0.74 -2.3 519,372 + Shewana3_0443 0.79 -0.6 519,420 + Shewana3_0443 0.82 -0.7 519,445 + Shewana3_0443 0.83 -1.8 519,457 + Shewana3_0443 0.84 -2.3 519,479 + Shewana3_0443 0.86 -1.0 519,479 + Shewana3_0443 0.86 -1.7 519,487 - Shewana3_0443 0.86 +0.7 519,679 + -3.0 519,745 + +0.4 519,859 - +0.3 519,980 + Shewana3_0444 0.20 +0.2 519,980 + Shewana3_0444 0.20 -0.3 520,111 + Shewana3_0444 0.35 -1.9 520,441 + Shewana3_0444 0.72 -0.5
Or see this region's nucleotide sequence