Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0418 and Shewana3_0419 are separated by 122 nucleotides Shewana3_0419 and Shewana3_0420 are separated by 307 nucleotides
Shewana3_0418: Shewana3_0418 - type II secretion system protein (RefSeq), at 475,431 to 476,702
_0418
Shewana3_0419: Shewana3_0419 - type IV-A pilus assembly ATPase PilB (RefSeq), at 476,825 to 478,534
_0419
Shewana3_0420: Shewana3_0420 - O-antigen polymerase (RefSeq), at 478,842 to 480,278
_0420
Position (kb) 476
477
478
479 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7 at 476.070 kb on + strand, within Shewana3_0418 at 476.091 kb on + strand, within Shewana3_0418 at 476.202 kb on + strand, within Shewana3_0418 at 476.224 kb on + strand, within Shewana3_0418 at 476.229 kb on + strand, within Shewana3_0418 at 476.384 kb on + strand, within Shewana3_0418 at 476.490 kb on - strand, within Shewana3_0418 at 476.515 kb on + strand, within Shewana3_0418 at 476.515 kb on + strand, within Shewana3_0418 at 476.522 kb on + strand, within Shewana3_0418 at 476.589 kb on + strand at 476.807 kb on - strand at 476.902 kb on + strand at 476.912 kb on + strand at 476.913 kb on + strand at 476.920 kb on - strand at 476.920 kb on - strand at 477.054 kb on + strand, within Shewana3_0419 at 477.055 kb on + strand, within Shewana3_0419 at 477.055 kb on - strand, within Shewana3_0419 at 477.063 kb on - strand, within Shewana3_0419 at 477.105 kb on - strand, within Shewana3_0419 at 477.128 kb on + strand, within Shewana3_0419 at 477.238 kb on + strand, within Shewana3_0419 at 477.266 kb on - strand, within Shewana3_0419 at 477.303 kb on + strand, within Shewana3_0419 at 477.356 kb on - strand, within Shewana3_0419 at 477.378 kb on + strand, within Shewana3_0419 at 477.409 kb on - strand, within Shewana3_0419 at 477.409 kb on - strand, within Shewana3_0419 at 477.488 kb on - strand, within Shewana3_0419 at 477.506 kb on + strand, within Shewana3_0419 at 477.506 kb on + strand, within Shewana3_0419 at 477.511 kb on + strand, within Shewana3_0419 at 477.514 kb on - strand, within Shewana3_0419 at 477.514 kb on - strand, within Shewana3_0419 at 477.514 kb on - strand, within Shewana3_0419 at 477.514 kb on - strand, within Shewana3_0419 at 477.514 kb on - strand, within Shewana3_0419 at 477.514 kb on - strand, within Shewana3_0419 at 477.516 kb on + strand, within Shewana3_0419 at 477.516 kb on + strand, within Shewana3_0419 at 477.516 kb on + strand, within Shewana3_0419 at 477.524 kb on - strand, within Shewana3_0419 at 477.524 kb on - strand, within Shewana3_0419 at 477.569 kb on + strand, within Shewana3_0419 at 477.577 kb on - strand, within Shewana3_0419 at 477.700 kb on + strand, within Shewana3_0419 at 477.708 kb on - strand, within Shewana3_0419 at 477.772 kb on - strand, within Shewana3_0419 at 477.791 kb on - strand, within Shewana3_0419 at 477.838 kb on - strand, within Shewana3_0419 at 477.930 kb on - strand, within Shewana3_0419 at 478.059 kb on + strand, within Shewana3_0419 at 478.062 kb on - strand, within Shewana3_0419 at 478.073 kb on + strand, within Shewana3_0419 at 478.119 kb on + strand, within Shewana3_0419 at 478.127 kb on - strand, within Shewana3_0419 at 478.210 kb on + strand, within Shewana3_0419 at 478.210 kb on + strand, within Shewana3_0419 at 478.218 kb on - strand, within Shewana3_0419 at 478.218 kb on - strand, within Shewana3_0419 at 478.218 kb on - strand, within Shewana3_0419 at 478.367 kb on - strand at 478.369 kb on + strand at 478.392 kb on + strand at 478.392 kb on + strand at 478.400 kb on - strand at 478.400 kb on - strand at 478.405 kb on - strand at 478.470 kb on + strand at 478.470 kb on + strand at 478.470 kb on + strand at 478.470 kb on + strand at 478.475 kb on + strand at 478.478 kb on - strand at 478.483 kb on - strand at 478.490 kb on - strand at 478.502 kb on + strand at 478.507 kb on - strand at 478.513 kb on + strand at 478.514 kb on + strand at 478.521 kb on - strand at 478.522 kb on - strand at 478.522 kb on - strand at 478.522 kb on - strand at 478.558 kb on - strand at 478.686 kb on + strand at 478.686 kb on + strand at 478.686 kb on + strand at 478.686 kb on + strand at 478.686 kb on + strand at 478.696 kb on + strand at 478.725 kb on - strand at 478.799 kb on - strand at 478.823 kb on + strand at 478.841 kb on - strand at 478.867 kb on - strand at 478.876 kb on + strand at 478.876 kb on + strand at 478.876 kb on + strand at 478.876 kb on + strand at 478.884 kb on - strand at 478.884 kb on - strand at 478.884 kb on - strand at 478.884 kb on - strand at 478.884 kb on - strand at 478.930 kb on - strand at 478.939 kb on + strand at 478.945 kb on + strand at 478.946 kb on + strand at 478.953 kb on - strand at 478.953 kb on - strand at 478.953 kb on - strand at 478.955 kb on + strand at 478.955 kb on + strand at 478.955 kb on + strand at 478.955 kb on + strand at 478.963 kb on + strand at 478.977 kb on - strand at 479.005 kb on + strand, within Shewana3_0420 at 479.013 kb on - strand, within Shewana3_0420 at 479.033 kb on + strand, within Shewana3_0420 at 479.057 kb on + strand, within Shewana3_0420 at 479.059 kb on + strand, within Shewana3_0420 at 479.059 kb on + strand, within Shewana3_0420 at 479.067 kb on - strand, within Shewana3_0420 at 479.069 kb on + strand, within Shewana3_0420 at 479.071 kb on + strand, within Shewana3_0420 at 479.075 kb on - strand, within Shewana3_0420 at 479.083 kb on + strand, within Shewana3_0420 at 479.185 kb on - strand, within Shewana3_0420 at 479.198 kb on - strand, within Shewana3_0420 at 479.200 kb on - strand, within Shewana3_0420 at 479.205 kb on + strand, within Shewana3_0420 at 479.205 kb on + strand, within Shewana3_0420 at 479.210 kb on + strand, within Shewana3_0420 at 479.213 kb on - strand, within Shewana3_0420 at 479.213 kb on - strand, within Shewana3_0420 at 479.213 kb on - strand, within Shewana3_0420 at 479.215 kb on + strand, within Shewana3_0420 at 479.215 kb on + strand, within Shewana3_0420 at 479.215 kb on + strand, within Shewana3_0420 at 479.215 kb on + strand, within Shewana3_0420 at 479.218 kb on - strand, within Shewana3_0420 at 479.226 kb on + strand, within Shewana3_0420 at 479.226 kb on + strand, within Shewana3_0420 at 479.226 kb on - strand, within Shewana3_0420 at 479.226 kb on - strand, within Shewana3_0420 at 479.234 kb on - strand, within Shewana3_0420 at 479.315 kb on - strand, within Shewana3_0420 at 479.323 kb on - strand, within Shewana3_0420 at 479.328 kb on + strand, within Shewana3_0420 at 479.375 kb on + strand, within Shewana3_0420 at 479.451 kb on + strand, within Shewana3_0420 at 479.452 kb on + strand, within Shewana3_0420 at 479.458 kb on + strand, within Shewana3_0420 at 479.458 kb on + strand, within Shewana3_0420 at 479.459 kb on - strand, within Shewana3_0420 at 479.459 kb on - strand, within Shewana3_0420 at 479.473 kb on + strand, within Shewana3_0420 at 479.473 kb on + strand, within Shewana3_0420 at 479.473 kb on + strand, within Shewana3_0420 at 479.479 kb on - strand, within Shewana3_0420 at 479.481 kb on - strand, within Shewana3_0420 at 479.481 kb on - strand, within Shewana3_0420 at 479.481 kb on - strand, within Shewana3_0420
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 476,070 + Shewana3_0418 0.50 -2.3 476,091 + Shewana3_0418 0.52 -0.8 476,202 + Shewana3_0418 0.61 -1.2 476,224 + Shewana3_0418 0.62 -0.5 476,229 + Shewana3_0418 0.63 +0.1 476,384 + Shewana3_0418 0.75 +0.6 476,490 - Shewana3_0418 0.83 +2.3 476,515 + Shewana3_0418 0.85 -0.8 476,515 + Shewana3_0418 0.85 -1.4 476,522 + Shewana3_0418 0.86 -0.8 476,589 + -0.2 476,807 - +0.9 476,902 + -0.9 476,912 + -0.9 476,913 + +2.1 476,920 - +0.3 476,920 - -1.4 477,054 + Shewana3_0419 0.13 -2.0 477,055 + Shewana3_0419 0.13 -1.9 477,055 - Shewana3_0419 0.13 +2.3 477,063 - Shewana3_0419 0.14 +0.2 477,105 - Shewana3_0419 0.16 +0.1 477,128 + Shewana3_0419 0.18 -0.9 477,238 + Shewana3_0419 0.24 +0.8 477,266 - Shewana3_0419 0.26 -1.4 477,303 + Shewana3_0419 0.28 -0.4 477,356 - Shewana3_0419 0.31 +0.0 477,378 + Shewana3_0419 0.32 +2.4 477,409 - Shewana3_0419 0.34 +0.4 477,409 - Shewana3_0419 0.34 -0.0 477,488 - Shewana3_0419 0.39 +0.3 477,506 + Shewana3_0419 0.40 -0.3 477,506 + Shewana3_0419 0.40 +0.2 477,511 + Shewana3_0419 0.40 -2.3 477,514 - Shewana3_0419 0.40 +0.0 477,514 - Shewana3_0419 0.40 -2.5 477,514 - Shewana3_0419 0.40 +7.4 477,514 - Shewana3_0419 0.40 +0.0 477,514 - Shewana3_0419 0.40 +0.3 477,514 - Shewana3_0419 0.40 +0.7 477,516 + Shewana3_0419 0.40 -2.5 477,516 + Shewana3_0419 0.40 -0.5 477,516 + Shewana3_0419 0.40 -0.1 477,524 - Shewana3_0419 0.41 -0.9 477,524 - Shewana3_0419 0.41 +1.1 477,569 + Shewana3_0419 0.44 -0.5 477,577 - Shewana3_0419 0.44 +0.1 477,700 + Shewana3_0419 0.51 +0.4 477,708 - Shewana3_0419 0.52 +0.0 477,772 - Shewana3_0419 0.55 +0.3 477,791 - Shewana3_0419 0.56 -0.4 477,838 - Shewana3_0419 0.59 +0.0 477,930 - Shewana3_0419 0.65 +0.2 478,059 + Shewana3_0419 0.72 +2.7 478,062 - Shewana3_0419 0.72 +1.6 478,073 + Shewana3_0419 0.73 -0.2 478,119 + Shewana3_0419 0.76 -0.2 478,127 - Shewana3_0419 0.76 +0.5 478,210 + Shewana3_0419 0.81 -0.7 478,210 + Shewana3_0419 0.81 -0.9 478,218 - Shewana3_0419 0.81 +0.0 478,218 - Shewana3_0419 0.81 -0.3 478,218 - Shewana3_0419 0.81 -0.1 478,367 - -0.2 478,369 + -0.6 478,392 + -0.2 478,392 + -0.2 478,400 - +0.0 478,400 - +2.2 478,405 - -0.2 478,470 + +2.1 478,470 + +0.3 478,470 + +0.2 478,470 + -1.7 478,475 + +0.1 478,478 - +0.7 478,483 - -0.1 478,490 - +0.3 478,502 + +1.1 478,507 - +0.6 478,513 + +0.2 478,514 + +2.6 478,521 - -1.6 478,522 - -0.6 478,522 - +0.2 478,522 - -0.4 478,558 - +5.5 478,686 + +0.0 478,686 + -0.9 478,686 + -0.2 478,686 + -0.5 478,686 + +0.6 478,696 + -0.6 478,725 - -0.6 478,799 - -1.0 478,823 + -2.7 478,841 - -0.3 478,867 - +0.0 478,876 + -0.4 478,876 + -1.7 478,876 + -0.5 478,876 + +0.3 478,884 - -0.8 478,884 - +0.3 478,884 - +1.3 478,884 - +0.4 478,884 - -1.6 478,930 - -0.8 478,939 + +0.8 478,945 + -0.6 478,946 + -1.3 478,953 - -0.8 478,953 - +1.9 478,953 - -0.1 478,955 + -0.0 478,955 + -0.5 478,955 + +0.6 478,955 + -0.1 478,963 + +0.5 478,977 - -1.5 479,005 + Shewana3_0420 0.11 -0.3 479,013 - Shewana3_0420 0.12 -0.0 479,033 + Shewana3_0420 0.13 -0.5 479,057 + Shewana3_0420 0.15 +0.1 479,059 + Shewana3_0420 0.15 -0.0 479,059 + Shewana3_0420 0.15 -0.3 479,067 - Shewana3_0420 0.16 +0.3 479,069 + Shewana3_0420 0.16 -0.2 479,071 + Shewana3_0420 0.16 +0.1 479,075 - Shewana3_0420 0.16 -1.5 479,083 + Shewana3_0420 0.17 +0.5 479,185 - Shewana3_0420 0.24 +1.6 479,198 - Shewana3_0420 0.25 -0.5 479,200 - Shewana3_0420 0.25 +0.7 479,205 + Shewana3_0420 0.25 -0.2 479,205 + Shewana3_0420 0.25 -0.4 479,210 + Shewana3_0420 0.26 -0.3 479,213 - Shewana3_0420 0.26 +5.5 479,213 - Shewana3_0420 0.26 +0.1 479,213 - Shewana3_0420 0.26 -0.6 479,215 + Shewana3_0420 0.26 +0.6 479,215 + Shewana3_0420 0.26 +1.5 479,215 + Shewana3_0420 0.26 +0.2 479,215 + Shewana3_0420 0.26 -1.5 479,218 - Shewana3_0420 0.26 +1.0 479,226 + Shewana3_0420 0.27 -0.2 479,226 + Shewana3_0420 0.27 -0.1 479,226 - Shewana3_0420 0.27 -0.7 479,226 - Shewana3_0420 0.27 +0.5 479,234 - Shewana3_0420 0.27 -0.5 479,315 - Shewana3_0420 0.33 +0.6 479,323 - Shewana3_0420 0.33 -0.2 479,328 + Shewana3_0420 0.34 -0.9 479,375 + Shewana3_0420 0.37 +0.9 479,451 + Shewana3_0420 0.42 -0.8 479,452 + Shewana3_0420 0.42 +0.3 479,458 + Shewana3_0420 0.43 +0.3 479,458 + Shewana3_0420 0.43 -1.8 479,459 - Shewana3_0420 0.43 -2.1 479,459 - Shewana3_0420 0.43 +3.1 479,473 + Shewana3_0420 0.44 -0.1 479,473 + Shewana3_0420 0.44 +0.1 479,473 + Shewana3_0420 0.44 +0.2 479,479 - Shewana3_0420 0.44 +0.2 479,481 - Shewana3_0420 0.44 +0.5 479,481 - Shewana3_0420 0.44 +0.1 479,481 - Shewana3_0420 0.44 -2.3
Or see this region's nucleotide sequence