Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0410 and Shewana3_0411 are separated by 0 nucleotides Shewana3_0411 and Shewana3_0412 are separated by 74 nucleotides Shewana3_0412 and Shewana3_0413 are separated by 147 nucleotides
Shewana3_0410: Shewana3_0410 - ATP-dependent RNA helicase RhlB (RefSeq), at 469,247 to 470,566
_0410
Shewana3_0411: Shewana3_0411 - Ppx/GppA phosphatase (RefSeq), at 470,567 to 471,493
_0411
Shewana3_0412: Shewana3_0412 - hypothetical protein (RefSeq), at 471,568 to 472,104
_0412
Shewana3_0413: Shewana3_0413 - mutator MutT protein (RefSeq), at 472,252 to 472,650
_0413
Position (kb) 470
471
472 Strain fitness (log2 ratio) -1
0
1
2
3 at 469.576 kb on - strand, within Shewana3_0410 at 469.589 kb on - strand, within Shewana3_0410 at 469.662 kb on - strand, within Shewana3_0410 at 469.733 kb on + strand, within Shewana3_0410 at 469.811 kb on + strand, within Shewana3_0410 at 470.059 kb on + strand, within Shewana3_0410 at 470.067 kb on - strand, within Shewana3_0410 at 470.067 kb on - strand, within Shewana3_0410 at 470.197 kb on + strand, within Shewana3_0410 at 470.362 kb on + strand, within Shewana3_0410 at 470.385 kb on - strand, within Shewana3_0410 at 470.497 kb on - strand at 470.498 kb on - strand at 470.687 kb on + strand, within Shewana3_0411 at 470.779 kb on + strand, within Shewana3_0411 at 470.787 kb on - strand, within Shewana3_0411 at 470.830 kb on - strand, within Shewana3_0411 at 470.834 kb on + strand, within Shewana3_0411 at 470.834 kb on + strand, within Shewana3_0411 at 470.870 kb on - strand, within Shewana3_0411 at 470.989 kb on + strand, within Shewana3_0411 at 471.041 kb on + strand, within Shewana3_0411 at 471.055 kb on - strand, within Shewana3_0411 at 471.139 kb on + strand, within Shewana3_0411 at 471.140 kb on + strand, within Shewana3_0411 at 471.163 kb on + strand, within Shewana3_0411 at 471.261 kb on + strand, within Shewana3_0411 at 471.280 kb on + strand, within Shewana3_0411 at 471.280 kb on + strand, within Shewana3_0411 at 471.528 kb on + strand at 471.529 kb on + strand at 471.553 kb on - strand at 471.725 kb on + strand, within Shewana3_0412 at 471.969 kb on + strand, within Shewana3_0412 at 472.172 kb on - strand at 472.445 kb on - strand, within Shewana3_0413
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 469,576 - Shewana3_0410 0.25 +1.1 469,589 - Shewana3_0410 0.26 +0.2 469,662 - Shewana3_0410 0.31 +1.5 469,733 + Shewana3_0410 0.37 +2.2 469,811 + Shewana3_0410 0.43 +0.5 470,059 + Shewana3_0410 0.62 +0.9 470,067 - Shewana3_0410 0.62 +0.7 470,067 - Shewana3_0410 0.62 +2.4 470,197 + Shewana3_0410 0.72 +1.2 470,362 + Shewana3_0410 0.84 +1.7 470,385 - Shewana3_0410 0.86 -0.2 470,497 - -0.1 470,498 - -0.3 470,687 + Shewana3_0411 0.13 +1.4 470,779 + Shewana3_0411 0.23 +1.7 470,787 - Shewana3_0411 0.24 +0.8 470,830 - Shewana3_0411 0.28 -1.2 470,834 + Shewana3_0411 0.29 +1.6 470,834 + Shewana3_0411 0.29 +1.1 470,870 - Shewana3_0411 0.33 +0.1 470,989 + Shewana3_0411 0.46 +1.1 471,041 + Shewana3_0411 0.51 +0.3 471,055 - Shewana3_0411 0.53 +1.2 471,139 + Shewana3_0411 0.62 +0.8 471,140 + Shewana3_0411 0.62 +2.5 471,163 + Shewana3_0411 0.64 +0.9 471,261 + Shewana3_0411 0.75 +1.4 471,280 + Shewana3_0411 0.77 +1.2 471,280 + Shewana3_0411 0.77 +0.3 471,528 + -0.4 471,529 + -0.4 471,553 - +0.1 471,725 + Shewana3_0412 0.29 +2.0 471,969 + Shewana3_0412 0.75 -0.5 472,172 - +1.0 472,445 - Shewana3_0413 0.48 +3.5
Or see this region's nucleotide sequence