Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0383 and Shewana3_0384 overlap by 4 nucleotides Shewana3_0384 and Shewana3_0385 are separated by 60 nucleotides Shewana3_0385 and hemC are separated by 46 nucleotides
Shewana3_0383: Shewana3_0383 - HemY domain-containing protein (RefSeq), at 443,292 to 444,458
_0383
Shewana3_0384: Shewana3_0384 - protein of unknown function DUF513, hemX (RefSeq), at 444,455 to 445,696
_0384
Shewana3_0385: Shewana3_0385 - uroporphyrinogen III synthase HEM4 (RefSeq), at 445,757 to 446,455
_0385
Shewana3_0386: hemC - porphobilinogen deaminase (RefSeq), at 446,502 to 447,434
hemC
Position (kb) 444
445
446 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 443.490 kb on - strand, within Shewana3_0383 at 443.681 kb on + strand, within Shewana3_0383 at 443.717 kb on + strand, within Shewana3_0383 at 443.725 kb on - strand, within Shewana3_0383 at 443.749 kb on + strand, within Shewana3_0383 at 443.757 kb on - strand, within Shewana3_0383 at 443.840 kb on + strand, within Shewana3_0383 at 443.879 kb on - strand, within Shewana3_0383 at 444.130 kb on + strand, within Shewana3_0383 at 444.289 kb on + strand, within Shewana3_0383 at 444.333 kb on + strand, within Shewana3_0383 at 444.604 kb on - strand, within Shewana3_0384 at 444.605 kb on + strand, within Shewana3_0384 at 444.613 kb on - strand, within Shewana3_0384 at 444.755 kb on + strand, within Shewana3_0384 at 444.768 kb on - strand, within Shewana3_0384 at 444.769 kb on - strand, within Shewana3_0384 at 444.785 kb on - strand, within Shewana3_0384 at 444.913 kb on - strand, within Shewana3_0384 at 444.957 kb on - strand, within Shewana3_0384 at 445.084 kb on + strand, within Shewana3_0384 at 445.179 kb on + strand, within Shewana3_0384 at 445.200 kb on - strand, within Shewana3_0384 at 445.214 kb on + strand, within Shewana3_0384 at 445.315 kb on - strand, within Shewana3_0384 at 445.439 kb on - strand, within Shewana3_0384 at 445.588 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 443,490 - Shewana3_0383 0.17 +0.0 443,681 + Shewana3_0383 0.33 -1.0 443,717 + Shewana3_0383 0.36 -0.5 443,725 - Shewana3_0383 0.37 -0.9 443,749 + Shewana3_0383 0.39 -0.9 443,757 - Shewana3_0383 0.40 -0.4 443,840 + Shewana3_0383 0.47 -1.4 443,879 - Shewana3_0383 0.50 +0.3 444,130 + Shewana3_0383 0.72 -0.8 444,289 + Shewana3_0383 0.85 +1.1 444,333 + Shewana3_0383 0.89 -0.0 444,604 - Shewana3_0384 0.12 -0.3 444,605 + Shewana3_0384 0.12 +0.2 444,613 - Shewana3_0384 0.13 -1.6 444,755 + Shewana3_0384 0.24 -1.7 444,768 - Shewana3_0384 0.25 -2.1 444,769 - Shewana3_0384 0.25 +1.3 444,785 - Shewana3_0384 0.27 +1.3 444,913 - Shewana3_0384 0.37 +0.2 444,957 - Shewana3_0384 0.40 -1.5 445,084 + Shewana3_0384 0.51 +0.7 445,179 + Shewana3_0384 0.58 +2.1 445,200 - Shewana3_0384 0.60 -1.6 445,214 + Shewana3_0384 0.61 +3.7 445,315 - Shewana3_0384 0.69 +0.9 445,439 - Shewana3_0384 0.79 +3.1 445,588 + -0.2
Or see this region's nucleotide sequence