Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0372 and Shewana3_0373 are separated by 25 nucleotides Shewana3_0373 and Shewana3_0374 are separated by 323 nucleotides
Shewana3_0372: Shewana3_0372 - RND family efflux transporter MFP subunit (RefSeq), at 409,534 to 410,652
_0372
Shewana3_0373: Shewana3_0373 - TetR family transcriptional regulator (RefSeq), at 410,678 to 411,244
_0373
Shewana3_0374: Shewana3_0374 - ATP-dependent DNA helicase Rep (RefSeq), at 411,568 to 413,583
_0374
Position (kb) 410
411
412 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6
7
8 at 409.686 kb on + strand, within Shewana3_0372 at 409.712 kb on + strand, within Shewana3_0372 at 409.755 kb on + strand, within Shewana3_0372 at 409.763 kb on - strand, within Shewana3_0372 at 409.776 kb on + strand, within Shewana3_0372 at 409.970 kb on + strand, within Shewana3_0372 at 409.978 kb on - strand, within Shewana3_0372 at 409.978 kb on - strand, within Shewana3_0372 at 410.019 kb on + strand, within Shewana3_0372 at 410.290 kb on + strand, within Shewana3_0372 at 410.495 kb on - strand, within Shewana3_0372 at 410.583 kb on + strand at 410.583 kb on + strand at 410.583 kb on + strand at 410.583 kb on + strand at 410.583 kb on + strand at 410.591 kb on - strand at 410.591 kb on - strand at 410.591 kb on - strand at 410.606 kb on + strand at 410.616 kb on - strand at 410.654 kb on + strand at 410.796 kb on - strand, within Shewana3_0373 at 410.930 kb on + strand, within Shewana3_0373 at 410.948 kb on + strand, within Shewana3_0373 at 411.030 kb on + strand, within Shewana3_0373 at 411.083 kb on - strand, within Shewana3_0373 at 411.220 kb on + strand at 411.220 kb on + strand at 411.222 kb on + strand at 411.226 kb on - strand at 411.378 kb on + strand at 411.433 kb on + strand at 411.449 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 409,686 + Shewana3_0372 0.14 -0.8 409,712 + Shewana3_0372 0.16 -1.7 409,755 + Shewana3_0372 0.20 -0.6 409,763 - Shewana3_0372 0.20 +0.5 409,776 + Shewana3_0372 0.22 +8.0 409,970 + Shewana3_0372 0.39 -0.1 409,978 - Shewana3_0372 0.40 -0.5 409,978 - Shewana3_0372 0.40 -1.6 410,019 + Shewana3_0372 0.43 -1.1 410,290 + Shewana3_0372 0.68 +0.2 410,495 - Shewana3_0372 0.86 -0.0 410,583 + +0.4 410,583 + +6.8 410,583 + -0.1 410,583 + -0.1 410,583 + -0.2 410,591 - +2.0 410,591 - -0.1 410,591 - +0.0 410,606 + +0.5 410,616 - -0.4 410,654 + -0.3 410,796 - Shewana3_0373 0.21 -1.2 410,930 + Shewana3_0373 0.44 +1.3 410,948 + Shewana3_0373 0.48 +1.3 411,030 + Shewana3_0373 0.62 +1.7 411,083 - Shewana3_0373 0.71 -0.2 411,220 + -1.6 411,220 + -0.7 411,222 + +1.1 411,226 - +1.1 411,378 + +0.2 411,433 + -0.2 411,449 - -0.5
Or see this region's nucleotide sequence