Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0337

Experiment: Paraquat dichloride 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0336 and Shewana3_0337 are separated by 8 nucleotidesShewana3_0337 and Shewana3_0338 overlap by 8 nucleotides Shewana3_0336: Shewana3_0336 - glycosyl transferase family protein (RefSeq), at 371,833 to 373,653 _0336 Shewana3_0337: Shewana3_0337 - thioester dehydrase family protein (RefSeq), at 373,662 to 374,036 _0337 Shewana3_0338: Shewana3_0338 - aconitate hydratase (RefSeq), at 374,029 to 375,393 _0338 Position (kb) 373 374 375Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 372.939 kb on + strand, within Shewana3_0336at 372.939 kb on + strand, within Shewana3_0336at 372.947 kb on - strand, within Shewana3_0336at 372.968 kb on + strand, within Shewana3_0336at 373.128 kb on - strand, within Shewana3_0336at 373.142 kb on - strand, within Shewana3_0336at 373.142 kb on - strand, within Shewana3_0336at 373.245 kb on + strand, within Shewana3_0336at 373.264 kb on - strand, within Shewana3_0336at 373.422 kb on - strand, within Shewana3_0336at 373.455 kb on - strand, within Shewana3_0336at 373.470 kb on + strand, within Shewana3_0336at 373.546 kb on + strandat 373.549 kb on - strandat 373.588 kb on - strandat 374.140 kb on - strandat 374.254 kb on - strand, within Shewana3_0338at 374.302 kb on - strand, within Shewana3_0338at 374.507 kb on - strand, within Shewana3_0338at 374.508 kb on - strand, within Shewana3_0338at 374.594 kb on + strand, within Shewana3_0338at 374.602 kb on - strand, within Shewana3_0338at 374.604 kb on + strand, within Shewana3_0338at 374.612 kb on - strand, within Shewana3_0338at 374.612 kb on - strand, within Shewana3_0338at 374.660 kb on - strand, within Shewana3_0338at 374.701 kb on - strand, within Shewana3_0338at 374.715 kb on + strand, within Shewana3_0338at 374.739 kb on + strand, within Shewana3_0338at 374.751 kb on + strand, within Shewana3_0338at 374.763 kb on + strand, within Shewana3_0338at 374.763 kb on + strand, within Shewana3_0338at 374.943 kb on + strand, within Shewana3_0338at 374.943 kb on + strand, within Shewana3_0338at 374.943 kb on + strand, within Shewana3_0338at 374.951 kb on - strand, within Shewana3_0338at 374.951 kb on - strand, within Shewana3_0338at 374.951 kb on - strand, within Shewana3_0338at 374.951 kb on - strand, within Shewana3_0338

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml
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372,939 + Shewana3_0336 0.61 +0.2
372,939 + Shewana3_0336 0.61 -0.9
372,947 - Shewana3_0336 0.61 -1.4
372,968 + Shewana3_0336 0.62 +0.4
373,128 - Shewana3_0336 0.71 +0.2
373,142 - Shewana3_0336 0.72 -0.4
373,142 - Shewana3_0336 0.72 -0.3
373,245 + Shewana3_0336 0.78 -0.2
373,264 - Shewana3_0336 0.79 +0.1
373,422 - Shewana3_0336 0.87 +0.0
373,455 - Shewana3_0336 0.89 -0.8
373,470 + Shewana3_0336 0.90 +0.7
373,546 + -0.9
373,549 - +0.8
373,588 - +0.6
374,140 - +1.7
374,254 - Shewana3_0338 0.16 +0.8
374,302 - Shewana3_0338 0.20 -0.6
374,507 - Shewana3_0338 0.35 +0.4
374,508 - Shewana3_0338 0.35 -0.1
374,594 + Shewana3_0338 0.41 -0.4
374,602 - Shewana3_0338 0.42 +0.1
374,604 + Shewana3_0338 0.42 -0.3
374,612 - Shewana3_0338 0.43 -0.3
374,612 - Shewana3_0338 0.43 -3.9
374,660 - Shewana3_0338 0.46 -0.5
374,701 - Shewana3_0338 0.49 -0.2
374,715 + Shewana3_0338 0.50 -0.3
374,739 + Shewana3_0338 0.52 -0.7
374,751 + Shewana3_0338 0.53 -0.2
374,763 + Shewana3_0338 0.54 -0.1
374,763 + Shewana3_0338 0.54 -0.3
374,943 + Shewana3_0338 0.67 -0.2
374,943 + Shewana3_0338 0.67 +1.2
374,943 + Shewana3_0338 0.67 +0.5
374,951 - Shewana3_0338 0.68 +0.4
374,951 - Shewana3_0338 0.68 -0.0
374,951 - Shewana3_0338 0.68 -0.8
374,951 - Shewana3_0338 0.68 +0.4

Or see this region's nucleotide sequence