Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0318 and Shewana3_0319 are separated by 95 nucleotides Shewana3_0319 and Shewana3_0320 are separated by 126 nucleotides Shewana3_0320 and Shewana3_0321 are separated by 57 nucleotides Shewana3_0321 and Shewana3_0322 are separated by 349 nucleotides
Shewana3_0318: Shewana3_0318 - rhodanese domain-containing protein (RefSeq), at 353,816 to 354,139
_0318
Shewana3_0319: Shewana3_0319 - XRE family transcriptional regulator (RefSeq), at 354,235 to 354,810
_0319
Shewana3_0320: Shewana3_0320 - benzoate transporter (RefSeq), at 354,937 to 356,127
_0320
Shewana3_0321: Shewana3_0321 - GCN5-related N-acetyltransferase (RefSeq), at 356,185 to 356,640
_0321
Shewana3_0322: Shewana3_0322 - antibiotic acetyltransferase (RefSeq), at 356,990 to 357,637
_0322
Position (kb) 354
355
356
357 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 353.943 kb on - strand, within Shewana3_0318 at 354.137 kb on - strand at 354.220 kb on + strand at 354.354 kb on + strand, within Shewana3_0319 at 354.362 kb on - strand, within Shewana3_0319 at 354.426 kb on + strand, within Shewana3_0319 at 354.657 kb on + strand, within Shewana3_0319 at 354.665 kb on - strand, within Shewana3_0319 at 354.680 kb on - strand, within Shewana3_0319 at 354.712 kb on + strand, within Shewana3_0319 at 354.745 kb on + strand, within Shewana3_0319 at 354.753 kb on + strand at 355.093 kb on - strand, within Shewana3_0320 at 355.097 kb on + strand, within Shewana3_0320 at 355.158 kb on + strand, within Shewana3_0320 at 355.282 kb on - strand, within Shewana3_0320 at 355.357 kb on - strand, within Shewana3_0320 at 355.359 kb on + strand, within Shewana3_0320 at 355.401 kb on - strand, within Shewana3_0320 at 355.424 kb on + strand, within Shewana3_0320 at 355.428 kb on - strand, within Shewana3_0320 at 355.450 kb on - strand, within Shewana3_0320 at 355.536 kb on + strand, within Shewana3_0320 at 355.587 kb on + strand, within Shewana3_0320 at 355.602 kb on + strand, within Shewana3_0320 at 355.775 kb on - strand, within Shewana3_0320 at 355.843 kb on + strand, within Shewana3_0320 at 355.991 kb on - strand, within Shewana3_0320 at 356.150 kb on - strand at 356.173 kb on - strand at 356.183 kb on - strand at 356.183 kb on - strand at 356.282 kb on - strand, within Shewana3_0321 at 356.370 kb on + strand, within Shewana3_0321 at 356.482 kb on + strand, within Shewana3_0321 at 356.500 kb on - strand, within Shewana3_0321 at 356.503 kb on + strand, within Shewana3_0321 at 356.529 kb on + strand, within Shewana3_0321 at 356.613 kb on + strand at 356.737 kb on + strand at 356.765 kb on + strand at 356.831 kb on - strand at 356.877 kb on - strand at 356.903 kb on + strand at 356.924 kb on + strand at 357.123 kb on + strand, within Shewana3_0322
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 353,943 - Shewana3_0318 0.39 -0.1 354,137 - -0.6 354,220 + -0.0 354,354 + Shewana3_0319 0.21 -1.3 354,362 - Shewana3_0319 0.22 -1.6 354,426 + Shewana3_0319 0.33 -2.8 354,657 + Shewana3_0319 0.73 -1.3 354,665 - Shewana3_0319 0.75 -1.3 354,680 - Shewana3_0319 0.77 -1.6 354,712 + Shewana3_0319 0.83 -1.4 354,745 + Shewana3_0319 0.89 -1.0 354,753 + -1.1 355,093 - Shewana3_0320 0.13 +0.3 355,097 + Shewana3_0320 0.13 -0.6 355,158 + Shewana3_0320 0.19 -2.8 355,282 - Shewana3_0320 0.29 +0.2 355,357 - Shewana3_0320 0.35 -0.7 355,359 + Shewana3_0320 0.35 -0.4 355,401 - Shewana3_0320 0.39 +0.4 355,424 + Shewana3_0320 0.41 -0.1 355,428 - Shewana3_0320 0.41 -0.9 355,450 - Shewana3_0320 0.43 -1.7 355,536 + Shewana3_0320 0.50 -0.2 355,587 + Shewana3_0320 0.55 +6.6 355,602 + Shewana3_0320 0.56 -1.1 355,775 - Shewana3_0320 0.70 -1.2 355,843 + Shewana3_0320 0.76 +0.3 355,991 - Shewana3_0320 0.88 -0.7 356,150 - -0.2 356,173 - -2.2 356,183 - -2.4 356,183 - -1.2 356,282 - Shewana3_0321 0.21 +0.1 356,370 + Shewana3_0321 0.41 +6.5 356,482 + Shewana3_0321 0.65 -0.9 356,500 - Shewana3_0321 0.69 -0.3 356,503 + Shewana3_0321 0.70 -0.4 356,529 + Shewana3_0321 0.75 +0.0 356,613 + +0.5 356,737 + -0.6 356,765 + -0.5 356,831 - -0.3 356,877 - -0.2 356,903 + +0.0 356,924 + -0.7 357,123 + Shewana3_0322 0.21 +0.3
Or see this region's nucleotide sequence