Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0297 and Shewana3_0298 are separated by 389 nucleotides Shewana3_0298 and Shewana3_0299 are separated by 59 nucleotides
Shewana3_0297: Shewana3_0297 - sodium:dicarboxylate symporter (RefSeq), at 329,865 to 331,109
_0297
Shewana3_0298: Shewana3_0298 - hypothetical protein (RefSeq), at 331,499 to 331,765
_0298
Shewana3_0299: Shewana3_0299 - TonB-dependent siderophore receptor (RefSeq), at 331,825 to 334,062
_0299
Position (kb) 331
332 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6
7 at 330.566 kb on - strand, within Shewana3_0297 at 330.700 kb on + strand, within Shewana3_0297 at 330.753 kb on + strand, within Shewana3_0297 at 330.763 kb on + strand, within Shewana3_0297 at 330.945 kb on + strand, within Shewana3_0297 at 330.971 kb on + strand, within Shewana3_0297 at 331.113 kb on - strand at 331.144 kb on + strand at 331.157 kb on - strand at 331.162 kb on - strand at 331.252 kb on - strand at 331.325 kb on + strand at 331.330 kb on + strand at 331.357 kb on - strand at 331.363 kb on + strand at 331.611 kb on + strand, within Shewana3_0298 at 331.619 kb on - strand, within Shewana3_0298 at 331.821 kb on + strand at 331.829 kb on - strand at 332.106 kb on - strand, within Shewana3_0299 at 332.150 kb on + strand, within Shewana3_0299 at 332.158 kb on + strand, within Shewana3_0299 at 332.164 kb on + strand, within Shewana3_0299 at 332.270 kb on + strand, within Shewana3_0299 at 332.297 kb on - strand, within Shewana3_0299 at 332.334 kb on - strand, within Shewana3_0299 at 332.383 kb on + strand, within Shewana3_0299 at 332.432 kb on - strand, within Shewana3_0299 at 332.680 kb on - strand, within Shewana3_0299 at 332.680 kb on - strand, within Shewana3_0299 at 332.680 kb on - strand, within Shewana3_0299 at 332.714 kb on - strand, within Shewana3_0299
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 330,566 - Shewana3_0297 0.56 -0.3 330,700 + Shewana3_0297 0.67 -0.2 330,753 + Shewana3_0297 0.71 -0.0 330,763 + Shewana3_0297 0.72 -0.4 330,945 + Shewana3_0297 0.87 +6.9 330,971 + Shewana3_0297 0.89 -0.5 331,113 - -1.1 331,144 + -0.5 331,157 - -1.0 331,162 - -1.2 331,252 - +3.1 331,325 + +0.5 331,330 + -0.4 331,357 - -1.1 331,363 + +0.3 331,611 + Shewana3_0298 0.42 +0.0 331,619 - Shewana3_0298 0.45 -0.9 331,821 + +0.6 331,829 - +0.3 332,106 - Shewana3_0299 0.13 -0.6 332,150 + Shewana3_0299 0.15 -0.3 332,158 + Shewana3_0299 0.15 -0.4 332,164 + Shewana3_0299 0.15 +0.4 332,270 + Shewana3_0299 0.20 -0.0 332,297 - Shewana3_0299 0.21 +0.2 332,334 - Shewana3_0299 0.23 +0.6 332,383 + Shewana3_0299 0.25 -0.0 332,432 - Shewana3_0299 0.27 +0.9 332,680 - Shewana3_0299 0.38 -0.9 332,680 - Shewana3_0299 0.38 +0.1 332,680 - Shewana3_0299 0.38 -0.8 332,714 - Shewana3_0299 0.40 -0.1
Or see this region's nucleotide sequence