Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0291 and Shewana3_0292 are separated by 105 nucleotides Shewana3_0292 and Shewana3_0293 are separated by 80 nucleotides Shewana3_0293 and Shewana3_0294 are separated by 283 nucleotides
Shewana3_0291: Shewana3_0291 - Zn-dependent hydrolase of the beta-lactamase fold (RefSeq), at 323,374 to 324,492
_0291
Shewana3_0292: Shewana3_0292 - TetR family transcriptional regulator (RefSeq), at 324,598 to 325,209
_0292
Shewana3_0293: Shewana3_0293 - anaerobic C4-dicarboxylate transporter (RefSeq), at 325,290 to 326,633
_0293
Shewana3_0294: Shewana3_0294 - hypothetical protein (RefSeq), at 326,917 to 328,095
_0294
Position (kb) 325
326
327 Strain fitness (log2 ratio) -2
-1
0
1
2 at 324.365 kb on - strand, within Shewana3_0291 at 324.810 kb on + strand, within Shewana3_0292 at 324.810 kb on + strand, within Shewana3_0292 at 325.102 kb on - strand, within Shewana3_0292 at 325.102 kb on - strand, within Shewana3_0292 at 325.103 kb on - strand, within Shewana3_0292 at 325.139 kb on + strand, within Shewana3_0292 at 325.342 kb on - strand at 325.507 kb on + strand, within Shewana3_0293 at 325.608 kb on + strand, within Shewana3_0293 at 325.636 kb on - strand, within Shewana3_0293 at 325.674 kb on + strand, within Shewana3_0293 at 325.682 kb on - strand, within Shewana3_0293 at 325.682 kb on - strand, within Shewana3_0293 at 325.717 kb on + strand, within Shewana3_0293 at 325.725 kb on - strand, within Shewana3_0293 at 325.958 kb on + strand, within Shewana3_0293 at 326.037 kb on - strand, within Shewana3_0293 at 326.066 kb on - strand, within Shewana3_0293 at 326.146 kb on - strand, within Shewana3_0293 at 326.309 kb on - strand, within Shewana3_0293 at 326.340 kb on + strand, within Shewana3_0293 at 326.509 kb on - strand at 326.527 kb on - strand at 326.573 kb on - strand at 326.677 kb on - strand at 326.929 kb on + strand at 326.945 kb on - strand at 327.008 kb on - strand at 327.008 kb on - strand at 327.085 kb on - strand, within Shewana3_0294 at 327.087 kb on + strand, within Shewana3_0294 at 327.124 kb on + strand, within Shewana3_0294 at 327.124 kb on + strand, within Shewana3_0294 at 327.132 kb on - strand, within Shewana3_0294 at 327.134 kb on + strand, within Shewana3_0294 at 327.165 kb on + strand, within Shewana3_0294 at 327.165 kb on + strand, within Shewana3_0294 at 327.165 kb on + strand, within Shewana3_0294 at 327.165 kb on + strand, within Shewana3_0294 at 327.165 kb on + strand, within Shewana3_0294 at 327.165 kb on + strand, within Shewana3_0294 at 327.173 kb on - strand, within Shewana3_0294 at 327.601 kb on + strand, within Shewana3_0294 at 327.609 kb on - strand, within Shewana3_0294
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 324,365 - Shewana3_0291 0.89 -0.1 324,810 + Shewana3_0292 0.35 +0.2 324,810 + Shewana3_0292 0.35 -0.6 325,102 - Shewana3_0292 0.82 -0.6 325,102 - Shewana3_0292 0.82 +0.1 325,103 - Shewana3_0292 0.83 +0.1 325,139 + Shewana3_0292 0.88 -1.7 325,342 - -1.7 325,507 + Shewana3_0293 0.16 -1.8 325,608 + Shewana3_0293 0.24 -1.4 325,636 - Shewana3_0293 0.26 -1.9 325,674 + Shewana3_0293 0.29 +0.2 325,682 - Shewana3_0293 0.29 -2.2 325,682 - Shewana3_0293 0.29 -0.8 325,717 + Shewana3_0293 0.32 -0.2 325,725 - Shewana3_0293 0.32 -0.4 325,958 + Shewana3_0293 0.50 -1.5 326,037 - Shewana3_0293 0.56 +0.1 326,066 - Shewana3_0293 0.58 +0.3 326,146 - Shewana3_0293 0.64 +0.0 326,309 - Shewana3_0293 0.76 +0.1 326,340 + Shewana3_0293 0.78 -0.4 326,509 - -1.1 326,527 - -0.8 326,573 - -1.3 326,677 - +0.4 326,929 + -0.5 326,945 - -0.2 327,008 - +0.1 327,008 - -0.9 327,085 - Shewana3_0294 0.14 +0.1 327,087 + Shewana3_0294 0.14 -0.1 327,124 + Shewana3_0294 0.18 -0.5 327,124 + Shewana3_0294 0.18 -0.3 327,132 - Shewana3_0294 0.18 +1.1 327,134 + Shewana3_0294 0.18 +2.0 327,165 + Shewana3_0294 0.21 +0.3 327,165 + Shewana3_0294 0.21 -0.6 327,165 + Shewana3_0294 0.21 -2.0 327,165 + Shewana3_0294 0.21 -0.9 327,165 + Shewana3_0294 0.21 +0.2 327,165 + Shewana3_0294 0.21 +0.3 327,173 - Shewana3_0294 0.22 +0.5 327,601 + Shewana3_0294 0.58 -0.8 327,609 - Shewana3_0294 0.59 +0.5
Or see this region's nucleotide sequence