Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0284 and Shewana3_0285 are separated by 119 nucleotides Shewana3_0285 and Shewana3_0286 are separated by 70 nucleotides Shewana3_0286 and Shewana3_0287 are separated by 303 nucleotides Shewana3_0287 and Shewana3_0288 are separated by 12 nucleotides
Shewana3_0284: Shewana3_0284 - pseudouridine synthase Rlu family protein (RefSeq), at 317,636 to 318,325
_0284
Shewana3_0285: Shewana3_0285 - hypothetical protein (RefSeq), at 318,445 to 318,612
_0285
Shewana3_0286: Shewana3_0286 - TonB-dependent receptor (RefSeq), at 318,683 to 320,854
_0286
Shewana3_0287: Shewana3_0287 - hypothetical protein (RefSeq), at 321,158 to 321,349
_0287
Shewana3_0288: Shewana3_0288 - peptidase M23B (RefSeq), at 321,362 to 321,874
_0288
Position (kb) 318
319
320
321 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 317.696 kb on + strand at 317.793 kb on + strand, within Shewana3_0284 at 317.793 kb on + strand, within Shewana3_0284 at 317.793 kb on + strand, within Shewana3_0284 at 317.793 kb on + strand, within Shewana3_0284 at 317.801 kb on - strand, within Shewana3_0284 at 317.801 kb on - strand, within Shewana3_0284 at 317.801 kb on - strand, within Shewana3_0284 at 317.859 kb on + strand, within Shewana3_0284 at 317.917 kb on + strand, within Shewana3_0284 at 318.015 kb on + strand, within Shewana3_0284 at 318.093 kb on + strand, within Shewana3_0284 at 318.129 kb on + strand, within Shewana3_0284 at 318.137 kb on - strand, within Shewana3_0284 at 318.236 kb on - strand, within Shewana3_0284 at 318.246 kb on - strand, within Shewana3_0284 at 318.294 kb on - strand at 318.523 kb on + strand, within Shewana3_0285 at 318.587 kb on + strand, within Shewana3_0285 at 318.587 kb on + strand, within Shewana3_0285 at 318.587 kb on + strand, within Shewana3_0285 at 318.691 kb on + strand at 318.817 kb on - strand at 318.830 kb on - strand at 318.886 kb on + strand at 318.966 kb on + strand, within Shewana3_0286 at 319.081 kb on + strand, within Shewana3_0286 at 319.094 kb on + strand, within Shewana3_0286 at 319.172 kb on + strand, within Shewana3_0286 at 319.180 kb on - strand, within Shewana3_0286 at 319.447 kb on - strand, within Shewana3_0286 at 319.502 kb on - strand, within Shewana3_0286 at 319.526 kb on - strand, within Shewana3_0286 at 319.615 kb on - strand, within Shewana3_0286 at 319.627 kb on - strand, within Shewana3_0286 at 319.874 kb on + strand, within Shewana3_0286 at 319.874 kb on + strand, within Shewana3_0286 at 319.926 kb on - strand, within Shewana3_0286 at 319.948 kb on + strand, within Shewana3_0286 at 319.952 kb on - strand, within Shewana3_0286 at 320.076 kb on + strand, within Shewana3_0286 at 320.260 kb on + strand, within Shewana3_0286 at 320.415 kb on - strand, within Shewana3_0286 at 320.493 kb on + strand, within Shewana3_0286 at 320.493 kb on + strand, within Shewana3_0286 at 320.568 kb on + strand, within Shewana3_0286 at 320.793 kb on + strand at 320.859 kb on - strand at 320.878 kb on - strand at 320.898 kb on - strand at 321.113 kb on + strand at 321.306 kb on + strand, within Shewana3_0287 at 321.357 kb on + strand at 321.441 kb on + strand, within Shewana3_0288 at 321.444 kb on - strand, within Shewana3_0288 at 321.449 kb on - strand, within Shewana3_0288 at 321.456 kb on - strand, within Shewana3_0288 at 321.462 kb on + strand, within Shewana3_0288 at 321.468 kb on - strand, within Shewana3_0288 at 321.516 kb on + strand, within Shewana3_0288 at 321.526 kb on - strand, within Shewana3_0288 at 321.566 kb on - strand, within Shewana3_0288 at 321.653 kb on - strand, within Shewana3_0288 at 321.724 kb on + strand, within Shewana3_0288
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 317,696 + +0.1 317,793 + Shewana3_0284 0.23 -1.8 317,793 + Shewana3_0284 0.23 +0.5 317,793 + Shewana3_0284 0.23 -1.3 317,793 + Shewana3_0284 0.23 -1.0 317,801 - Shewana3_0284 0.24 +0.5 317,801 - Shewana3_0284 0.24 +0.5 317,801 - Shewana3_0284 0.24 +1.1 317,859 + Shewana3_0284 0.32 -0.9 317,917 + Shewana3_0284 0.41 +1.5 318,015 + Shewana3_0284 0.55 +0.5 318,093 + Shewana3_0284 0.66 -0.2 318,129 + Shewana3_0284 0.71 +0.2 318,137 - Shewana3_0284 0.73 -3.1 318,236 - Shewana3_0284 0.87 +0.1 318,246 - Shewana3_0284 0.88 -0.3 318,294 - +0.2 318,523 + Shewana3_0285 0.46 +6.7 318,587 + Shewana3_0285 0.85 +0.8 318,587 + Shewana3_0285 0.85 +1.3 318,587 + Shewana3_0285 0.85 -0.0 318,691 + -1.0 318,817 - +0.0 318,830 - -0.0 318,886 + +1.4 318,966 + Shewana3_0286 0.13 +0.0 319,081 + Shewana3_0286 0.18 -0.6 319,094 + Shewana3_0286 0.19 +0.5 319,172 + Shewana3_0286 0.23 -0.8 319,180 - Shewana3_0286 0.23 +1.6 319,447 - Shewana3_0286 0.35 +0.5 319,502 - Shewana3_0286 0.38 +0.7 319,526 - Shewana3_0286 0.39 +0.4 319,615 - Shewana3_0286 0.43 +0.9 319,627 - Shewana3_0286 0.43 +0.3 319,874 + Shewana3_0286 0.55 +0.3 319,874 + Shewana3_0286 0.55 -1.2 319,926 - Shewana3_0286 0.57 +1.3 319,948 + Shewana3_0286 0.58 +1.1 319,952 - Shewana3_0286 0.58 +0.3 320,076 + Shewana3_0286 0.64 -0.8 320,260 + Shewana3_0286 0.73 +2.7 320,415 - Shewana3_0286 0.80 +6.4 320,493 + Shewana3_0286 0.83 -2.2 320,493 + Shewana3_0286 0.83 -0.0 320,568 + Shewana3_0286 0.87 -0.4 320,793 + -1.2 320,859 - +0.1 320,878 - -0.8 320,898 - +0.0 321,113 + +0.8 321,306 + Shewana3_0287 0.77 -0.2 321,357 + +0.2 321,441 + Shewana3_0288 0.15 -0.1 321,444 - Shewana3_0288 0.16 +1.3 321,449 - Shewana3_0288 0.17 -1.0 321,456 - Shewana3_0288 0.18 -0.2 321,462 + Shewana3_0288 0.19 -0.9 321,468 - Shewana3_0288 0.21 +0.5 321,516 + Shewana3_0288 0.30 -1.8 321,526 - Shewana3_0288 0.32 -0.8 321,566 - Shewana3_0288 0.40 -0.3 321,653 - Shewana3_0288 0.57 -1.4 321,724 + Shewana3_0288 0.71 -0.1
Or see this region's nucleotide sequence