Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0230 and Shewana3_0231 are separated by 11 nucleotides Shewana3_0231 and Shewana3_0232 are separated by 325 nucleotides Shewana3_0232 and Shewana3_0233 are separated by 83 nucleotides
Shewana3_0230: Shewana3_0230 - heme exporter protein CcmB (RefSeq), at 259,531 to 260,217
_0230
Shewana3_0231: Shewana3_0231 - cytochrome c biogenesis protein CcmA (RefSeq), at 260,229 to 260,879
_0231
Shewana3_0232: Shewana3_0232 - cytochrome c, class I (RefSeq), at 261,205 to 261,504
_0232
Shewana3_0233: Shewana3_0233 - TPR repeat-containing protein (RefSeq), at 261,588 to 262,835
_0233
Position (kb) 261
262 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 260.226 kb on + strand at 260.234 kb on - strand at 260.307 kb on - strand, within Shewana3_0231 at 260.451 kb on + strand, within Shewana3_0231 at 260.537 kb on + strand, within Shewana3_0231 at 260.593 kb on + strand, within Shewana3_0231 at 260.696 kb on + strand, within Shewana3_0231 at 260.697 kb on - strand, within Shewana3_0231 at 260.697 kb on - strand, within Shewana3_0231 at 260.700 kb on + strand, within Shewana3_0231 at 260.704 kb on - strand, within Shewana3_0231 at 260.708 kb on - strand, within Shewana3_0231 at 260.708 kb on - strand, within Shewana3_0231 at 260.835 kb on - strand at 260.846 kb on + strand at 260.955 kb on - strand at 260.955 kb on - strand at 260.993 kb on + strand at 261.129 kb on + strand at 261.130 kb on + strand at 261.147 kb on - strand at 261.246 kb on - strand, within Shewana3_0232 at 261.302 kb on + strand, within Shewana3_0232 at 261.302 kb on - strand, within Shewana3_0232 at 261.302 kb on - strand, within Shewana3_0232 at 261.391 kb on + strand, within Shewana3_0232 at 261.391 kb on + strand, within Shewana3_0232 at 261.391 kb on + strand, within Shewana3_0232 at 261.391 kb on + strand, within Shewana3_0232 at 261.391 kb on + strand, within Shewana3_0232 at 261.391 kb on + strand, within Shewana3_0232 at 261.391 kb on + strand, within Shewana3_0232 at 261.391 kb on + strand, within Shewana3_0232 at 261.391 kb on + strand, within Shewana3_0232 at 261.391 kb on + strand, within Shewana3_0232 at 261.399 kb on - strand, within Shewana3_0232 at 261.399 kb on - strand, within Shewana3_0232 at 261.399 kb on - strand, within Shewana3_0232 at 261.399 kb on - strand, within Shewana3_0232 at 261.399 kb on - strand, within Shewana3_0232 at 261.399 kb on - strand, within Shewana3_0232 at 261.399 kb on - strand, within Shewana3_0232 at 261.401 kb on + strand, within Shewana3_0232 at 261.401 kb on + strand, within Shewana3_0232 at 261.548 kb on - strand at 261.565 kb on + strand at 261.573 kb on - strand at 261.596 kb on - strand at 261.624 kb on - strand at 261.752 kb on + strand, within Shewana3_0233 at 261.755 kb on - strand, within Shewana3_0233 at 261.824 kb on + strand, within Shewana3_0233 at 261.854 kb on - strand, within Shewana3_0233 at 261.916 kb on - strand, within Shewana3_0233 at 262.012 kb on + strand, within Shewana3_0233 at 262.192 kb on + strand, within Shewana3_0233 at 262.223 kb on - strand, within Shewana3_0233 at 262.223 kb on - strand, within Shewana3_0233 at 262.223 kb on - strand, within Shewana3_0233 at 262.223 kb on - strand, within Shewana3_0233 at 262.223 kb on - strand, within Shewana3_0233 at 262.247 kb on - strand, within Shewana3_0233 at 262.317 kb on + strand, within Shewana3_0233 at 262.402 kb on + strand, within Shewana3_0233
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 260,226 + +2.5 260,234 - +2.2 260,307 - Shewana3_0231 0.12 -0.1 260,451 + Shewana3_0231 0.34 +1.3 260,537 + Shewana3_0231 0.47 +1.4 260,593 + Shewana3_0231 0.56 +2.4 260,696 + Shewana3_0231 0.72 +0.3 260,697 - Shewana3_0231 0.72 +1.6 260,697 - Shewana3_0231 0.72 +0.8 260,700 + Shewana3_0231 0.72 +1.3 260,704 - Shewana3_0231 0.73 +0.7 260,708 - Shewana3_0231 0.74 +1.3 260,708 - Shewana3_0231 0.74 +0.6 260,835 - +1.4 260,846 + -0.1 260,955 - -0.9 260,955 - +0.2 260,993 + +2.9 261,129 + +3.2 261,130 + +3.4 261,147 - +0.5 261,246 - Shewana3_0232 0.14 +3.6 261,302 + Shewana3_0232 0.32 +3.0 261,302 - Shewana3_0232 0.32 +3.5 261,302 - Shewana3_0232 0.32 +1.8 261,391 + Shewana3_0232 0.62 +2.1 261,391 + Shewana3_0232 0.62 +1.8 261,391 + Shewana3_0232 0.62 +1.7 261,391 + Shewana3_0232 0.62 +1.8 261,391 + Shewana3_0232 0.62 +2.7 261,391 + Shewana3_0232 0.62 +2.2 261,391 + Shewana3_0232 0.62 +1.8 261,391 + Shewana3_0232 0.62 +1.7 261,391 + Shewana3_0232 0.62 +2.1 261,391 + Shewana3_0232 0.62 +2.2 261,399 - Shewana3_0232 0.65 +2.7 261,399 - Shewana3_0232 0.65 +0.2 261,399 - Shewana3_0232 0.65 +1.6 261,399 - Shewana3_0232 0.65 +0.4 261,399 - Shewana3_0232 0.65 +1.5 261,399 - Shewana3_0232 0.65 +2.6 261,399 - Shewana3_0232 0.65 +1.2 261,401 + Shewana3_0232 0.65 +3.8 261,401 + Shewana3_0232 0.65 +3.0 261,548 - -0.1 261,565 + +0.7 261,573 - -0.5 261,596 - -0.3 261,624 - +1.8 261,752 + Shewana3_0233 0.13 +0.6 261,755 - Shewana3_0233 0.13 +0.2 261,824 + Shewana3_0233 0.19 +0.4 261,854 - Shewana3_0233 0.21 -0.3 261,916 - Shewana3_0233 0.26 -0.2 262,012 + Shewana3_0233 0.34 +1.2 262,192 + Shewana3_0233 0.48 -0.3 262,223 - Shewana3_0233 0.51 +2.8 262,223 - Shewana3_0233 0.51 +0.6 262,223 - Shewana3_0233 0.51 +1.5 262,223 - Shewana3_0233 0.51 +0.8 262,223 - Shewana3_0233 0.51 +0.9 262,247 - Shewana3_0233 0.53 +0.7 262,317 + Shewana3_0233 0.58 +1.9 262,402 + Shewana3_0233 0.65 +1.2
Or see this region's nucleotide sequence