Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0161 and Shewana3_0162 are separated by 63 nucleotides Shewana3_0162 and Shewana3_0163 are separated by 105 nucleotides Shewana3_0163 and Shewana3_0164 overlap by 23 nucleotides
Shewana3_0161: Shewana3_0161 - type II secretion system protein N (RefSeq), at 184,805 to 185,566
_0161
Shewana3_0162: Shewana3_0162 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 185,630 to 186,292
_0162
Shewana3_0163: Shewana3_0163 - aspartyl/asparaginyl beta-hydroxylase (RefSeq), at 186,398 to 187,012
_0163
Shewana3_0164: Shewana3_0164 - phytanoyl-CoA dioxygenase (RefSeq), at 186,990 to 189,002
_0164
Position (kb) 186
187
188 Strain fitness (log2 ratio) -1
0
1
2 at 185.490 kb on - strand at 185.529 kb on + strand at 185.890 kb on + strand, within Shewana3_0162 at 185.923 kb on + strand, within Shewana3_0162 at 185.937 kb on + strand, within Shewana3_0162 at 185.937 kb on + strand, within Shewana3_0162 at 185.945 kb on - strand, within Shewana3_0162 at 186.049 kb on - strand, within Shewana3_0162 at 186.122 kb on - strand, within Shewana3_0162 at 186.171 kb on - strand, within Shewana3_0162 at 186.171 kb on - strand, within Shewana3_0162 at 186.270 kb on - strand at 186.406 kb on + strand at 186.552 kb on - strand, within Shewana3_0163 at 186.563 kb on + strand, within Shewana3_0163 at 186.571 kb on - strand, within Shewana3_0163 at 186.578 kb on + strand, within Shewana3_0163 at 186.654 kb on + strand, within Shewana3_0163 at 186.764 kb on + strand, within Shewana3_0163 at 186.772 kb on - strand, within Shewana3_0163 at 186.777 kb on + strand, within Shewana3_0163 at 186.777 kb on + strand, within Shewana3_0163 at 186.785 kb on - strand, within Shewana3_0163 at 186.847 kb on + strand, within Shewana3_0163 at 187.012 kb on + strand at 187.047 kb on - strand at 187.078 kb on + strand at 187.078 kb on + strand at 187.180 kb on + strand at 187.250 kb on - strand, within Shewana3_0164 at 187.294 kb on - strand, within Shewana3_0164 at 187.428 kb on + strand, within Shewana3_0164 at 187.436 kb on - strand, within Shewana3_0164 at 187.436 kb on - strand, within Shewana3_0164 at 187.490 kb on + strand, within Shewana3_0164 at 187.527 kb on + strand, within Shewana3_0164 at 187.925 kb on - strand, within Shewana3_0164
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 185,490 - +0.5 185,529 + +0.0 185,890 + Shewana3_0162 0.39 +1.0 185,923 + Shewana3_0162 0.44 +0.6 185,937 + Shewana3_0162 0.46 +0.5 185,937 + Shewana3_0162 0.46 +0.7 185,945 - Shewana3_0162 0.48 +0.6 186,049 - Shewana3_0162 0.63 +0.1 186,122 - Shewana3_0162 0.74 +0.4 186,171 - Shewana3_0162 0.82 -0.2 186,171 - Shewana3_0162 0.82 +0.6 186,270 - +1.0 186,406 + -0.3 186,552 - Shewana3_0163 0.25 -0.8 186,563 + Shewana3_0163 0.27 -0.3 186,571 - Shewana3_0163 0.28 -0.9 186,578 + Shewana3_0163 0.29 -0.4 186,654 + Shewana3_0163 0.42 +1.4 186,764 + Shewana3_0163 0.60 -0.2 186,772 - Shewana3_0163 0.61 -1.1 186,777 + Shewana3_0163 0.62 +1.5 186,777 + Shewana3_0163 0.62 -0.4 186,785 - Shewana3_0163 0.63 -0.9 186,847 + Shewana3_0163 0.73 +0.1 187,012 + -0.8 187,047 - -0.2 187,078 + +0.2 187,078 + -0.4 187,180 + +1.9 187,250 - Shewana3_0164 0.13 -0.6 187,294 - Shewana3_0164 0.15 +1.5 187,428 + Shewana3_0164 0.22 -0.1 187,436 - Shewana3_0164 0.22 -1.5 187,436 - Shewana3_0164 0.22 -0.9 187,490 + Shewana3_0164 0.25 +0.6 187,527 + Shewana3_0164 0.27 -0.2 187,925 - Shewana3_0164 0.46 +0.3
Or see this region's nucleotide sequence