Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0154 and Shewana3_0155 are separated by 1 nucleotides Shewana3_0155 and Shewana3_0156 overlap by 14 nucleotides Shewana3_0156 and Shewana3_0157 overlap by 20 nucleotides Shewana3_0157 and Shewana3_0158 overlap by 4 nucleotides
Shewana3_0154: Shewana3_0154 - general secretion pathway protein G (RefSeq), at 179,970 to 180,404
_0154
Shewana3_0155: Shewana3_0155 - general secretion pathway protein H (RefSeq), at 180,406 to 180,978
_0155
Shewana3_0156: Shewana3_0156 - general secretion pathway protein I (RefSeq), at 180,965 to 181,333
_0156
Shewana3_0157: Shewana3_0157 - general secretion pathway protein J (RefSeq), at 181,314 to 182,081
_0157
Shewana3_0158: Shewana3_0158 - general secretion pathway protein K (RefSeq), at 182,078 to 183,076
_0158
Position (kb) 181
182
183 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6
7
8
9 at 180.314 kb on - strand, within Shewana3_0154 at 180.329 kb on + strand, within Shewana3_0154 at 180.405 kb on + strand at 180.413 kb on - strand at 180.683 kb on - strand, within Shewana3_0155 at 180.748 kb on + strand, within Shewana3_0155 at 180.792 kb on + strand, within Shewana3_0155 at 180.877 kb on - strand, within Shewana3_0155 at 180.917 kb on + strand, within Shewana3_0155 at 180.950 kb on + strand at 180.957 kb on - strand at 180.979 kb on + strand at 180.979 kb on + strand at 180.979 kb on + strand at 180.979 kb on + strand at 180.987 kb on - strand at 181.053 kb on + strand, within Shewana3_0156 at 181.199 kb on + strand, within Shewana3_0156 at 181.303 kb on + strand at 181.353 kb on - strand at 181.423 kb on - strand, within Shewana3_0157 at 181.423 kb on - strand, within Shewana3_0157 at 181.423 kb on - strand, within Shewana3_0157 at 181.425 kb on + strand, within Shewana3_0157 at 181.425 kb on + strand, within Shewana3_0157 at 181.541 kb on + strand, within Shewana3_0157 at 181.558 kb on + strand, within Shewana3_0157 at 181.568 kb on + strand, within Shewana3_0157 at 181.576 kb on - strand, within Shewana3_0157 at 181.671 kb on - strand, within Shewana3_0157 at 181.855 kb on - strand, within Shewana3_0157 at 181.856 kb on - strand, within Shewana3_0157 at 181.979 kb on + strand, within Shewana3_0157 at 182.082 kb on - strand at 182.202 kb on + strand, within Shewana3_0158 at 182.208 kb on + strand, within Shewana3_0158 at 182.290 kb on - strand, within Shewana3_0158 at 182.300 kb on - strand, within Shewana3_0158 at 182.484 kb on - strand, within Shewana3_0158 at 182.752 kb on + strand, within Shewana3_0158 at 182.753 kb on - strand, within Shewana3_0158 at 182.869 kb on + strand, within Shewana3_0158 at 182.919 kb on - strand, within Shewana3_0158
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 180,314 - Shewana3_0154 0.79 +2.1 180,329 + Shewana3_0154 0.83 +2.0 180,405 + +0.3 180,413 - +3.5 180,683 - Shewana3_0155 0.48 +1.7 180,748 + Shewana3_0155 0.60 +2.3 180,792 + Shewana3_0155 0.67 +2.5 180,877 - Shewana3_0155 0.82 +1.7 180,917 + Shewana3_0155 0.89 +2.8 180,950 + -1.2 180,957 - +2.0 180,979 + +0.6 180,979 + -0.0 180,979 + +1.1 180,979 + -0.8 180,987 - +2.3 181,053 + Shewana3_0156 0.24 +1.7 181,199 + Shewana3_0156 0.63 +5.1 181,303 + +0.9 181,353 - +3.2 181,423 - Shewana3_0157 0.14 +1.9 181,423 - Shewana3_0157 0.14 +2.7 181,423 - Shewana3_0157 0.14 +2.3 181,425 + Shewana3_0157 0.14 +2.3 181,425 + Shewana3_0157 0.14 +2.7 181,541 + Shewana3_0157 0.30 +9.7 181,558 + Shewana3_0157 0.32 +3.4 181,568 + Shewana3_0157 0.33 +4.1 181,576 - Shewana3_0157 0.34 +4.3 181,671 - Shewana3_0157 0.46 +3.1 181,855 - Shewana3_0157 0.70 +2.7 181,856 - Shewana3_0157 0.71 +2.4 181,979 + Shewana3_0157 0.87 +0.5 182,082 - +3.5 182,202 + Shewana3_0158 0.12 +3.2 182,208 + Shewana3_0158 0.13 +3.3 182,290 - Shewana3_0158 0.21 +5.4 182,300 - Shewana3_0158 0.22 +5.6 182,484 - Shewana3_0158 0.41 +2.9 182,752 + Shewana3_0158 0.67 +3.8 182,753 - Shewana3_0158 0.68 +3.2 182,869 + Shewana3_0158 0.79 +3.7 182,919 - Shewana3_0158 0.84 +2.8
Or see this region's nucleotide sequence